TCONS_00030088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030088
Unique NameTCONS_00030088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length929

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030088 ID=TCONS_00030088|Name=TCONS_00030088|organism=Clytia hemisphaerica|type=transcript|length=929bp
NNATGAGAAACTCTACAAACAATTTGTACAAAATCGCGTTAATGAAATTC
GTGAAAATGATACGATAAAAGTTTGGAAACTTGTAGACACTTCGAACAAT
CCATCTGATGACAATTCGAGAGGACTTCTCTTCTCACAATTGAAGAACAA
CGAAAAATGGTTCCATGGTCCATCCTTCTTGTCTGGTCCAGAATCTTCCT
GGCCTGACTTGAAGCCTGGTGATAAATTTACTGAAAAACTTACTGAGAAC
ACTGTTAGCTTTTATTCTGGGAGTTGTCAATTTACTGATTTGACAACTGA
TGAGAAAATTACTTGTTTAACTTGTGATGAGAGTATTGATTTGATCCCCA
TTACAAAGTTTCATGTCGTTCGTGAGTATAAGGGCGACATGGAACAAGAA
GAAACGGAAGGGGTTTTTAGTTTAAACACACAATTCGATGAGCCGACTTT
ACAGGCAATAATCGAATATAAGAGATTTAGTTCATTAACAAAATTGCTTC
GTGTGATGGCCATGGTGATTGGCTTCATACGTAAGCTaagagaaaaagtt
aaaaagaagaaataagaaagaagaaaacagtCAACCAATACAATTATTGA
AACTAATAATAACAATGAAATTGATGATATGGTTCAAGCAAAACTTGTTT
TGCTCAAGGACGTACAGAAAGACTTTGATGACAAACAATTTGATCAAACG
AAGAAATCACTCAACGTATTCACAGATTCCAACGGCATCCTTCGTTGTCA
TGGTAGTATTGGCAACGCTCCTGTTCCATTCGATACAAAGTATCCGATCT
TACTTCCGAGACGTCATCCGTTCACATTACTGGTCGTTCGTGACAGCCAC
GTTAGCGTTGGTCACAACAAGACGAAAGAAACTTTGAATCACCTACGTCA
ATCGTACTGGATTCCAAAAGGACGTTCNN
Run BLAST on NCBI

protein sequence of TCONS_00030088-protein

>TCONS_00030088-protein ID=TCONS_00030088-protein|Name=TCONS_00030088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
XEKLYKQFVQNRVNEIRENDTIKVWKLVDTSNNPSDDNSRGLLFSQLKNN
EKWFHGPSFLSGPESSWPDLKPGDKFTEKLTENTVSFYSGSCQFTDLTTD
EKITCLTCDESIDLIPITKFHVVREYKGDMEQEETEGVFSLNTQFDEPTL
QAIIEYKRFSSLTKLLRVMAMVIGFIRKLREKVKKKK
Run BLAST on NCBI

transcript from alignment at sc0000790:96040..96968

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030088 ID=TCONS_00030088|Name=TCONS_00030088|organism=Clytia hemisphaerica|type=transcript|length=929bp|location=Sequence derived from alignment at sc0000790:96040..96968 (Clytia hemisphaerica)
NNGAACGTCCTTTTGGAATCCAGTACGATTGACGTAGGTGATTCAAAGTT
TCTTTCGTCTTGTTGTGACCAACGCTAACGTGGCTGTCACGAACGACCAG
TAATGTGAACGGATGACGTCTCGGAAGTAAGATCGGATACTTTGTATCGA
ATGGAACAGGAGCGTTGCCAATACTACCATGACAACGAAGGATGCCGTTG
GAATCTGTGAATACGTTGAGTGATTTCTTCGTTTGATCAAATTGTTTGTC
ATCAAAGTCTTTCTGTACGTCCTTGAGCAAAACAAGTTTTGCTTGAACCA
TATCATCAATTTCATTGTTATTATTAGTTTCAATAATTGTATTGGTTGac
tgttttcttctttcttatttcttctttttaactttttctcttAGCTTACG
TATGAAGCCAATCACCATGGCCATCACACGAAGCAATTTTGTTAATGAAC
TAAATCTCTTATATTCGATTATTGCCTGTAAAGTCGGCTCATCGAATTGT
GTGTTTAAACTAAAAACCCCTTCCGTTTCTTCTTGTTCCATGTCGCCCTT
ATACTCACGAACGACATGAAACTTTGTAATGGGGATCAAATCAATACTCT
CATCACAAGTTAAACAAGTAATTTTCTCATCAGTTGTCAAATCAGTAAAT
TGACAACTCCCAGAATAAAAGCTAACAGTGTTCTCAGTAAGTTTTTCAGT
AAATTTATCACCAGGCTTCAAGTCAGGCCAGGAAGATTCTGGACCAGACA
AGAAGGATGGACCATGGAACCATTTTTCGTTGTTCTTCAATTGTGAGAAG
AGAAGTCCTCTCGAATTGTCATCAGATGGATTGTTCGAAGTGTCTACAAG
TTTCCAAACTTTTATCGTATCATTTTCACGAATTTCATTAACGCGATTTT
GTACAAATTGTTTGTAGAGTTTCTCATNN

Coding sequence (CDS) from alignment at sc0000790:96040..96968

>TCONS_00030088 ID=TCONS_00030088|Name=TCONS_00030088|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0000790:96040..96968 (Clytia hemisphaerica)
ttatttcttctttttaactttttctcttAGCTTACGTATGAAGCCAATCA
CCATGGCCATCACACGAAGCAATTTTGTTAATGAACTAAATCTCTTATAT
TCGATTATTGCCTGTAAAGTCGGCTCATCGAATTGTGTGTTTAAACTAAA
AACCCCTTCCGTTTCTTCTTGTTCCATGTCGCCCTTATACTCACGAACGA
CATGAAACTTTGTAATGGGGATCAAATCAATACTCTCATCACAAGTTAAA
CAAGTAATTTTCTCATCAGTTGTCAAATCAGTAAATTGACAACTCCCAGA
ATAAAAGCTAACAGTGTTCTCAGTAAGTTTTTCAGTAAATTTATCACCAG
GCTTCAAGTCAGGCCAGGAAGATTCTGGACCAGACAAGAAGGATGGACCA
TGGAACCATTTTTCGTTGTTCTTCAATTGTGAGAAGAGAAGTCCTCTCGA
ATTGTCATCAGATGGATTGTTCGAAGTGTCTACAAGTTTCCAAACTTTTA
TCGTATCATTTTCACGAATTTCATTAACGCGATTTTGTACAAATTGTTTG
TAGAGTTTCTCATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017215XLOC_017215Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030088-proteinTCONS_00030088-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030088-exon-sc0000790-1491911889:96040..96968TCONS_00030088-exon-sc0000790-1491911889:96040..96968Clytia hemisphaericaexon
TCONS_00030088-exon-sc0000790-1510915933:96040..96968TCONS_00030088-exon-sc0000790-1510915933:96040..96968Clytia hemisphaericaexon
TCONS_00030088-exon-sc0000790-1575043694:96040..96968TCONS_00030088-exon-sc0000790-1575043694:96040..96968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000790supercontigsc0000790:96040..96968 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.8437	2.84865	1.48443	1.09166	2.65798	2.2579	2.91412	5.01151	3.21607	4.05316	4.62662	3.93693	5.95813	5.74137	11.4524	13.6638	6.35816	9.5955	3.75489	3.41841	5.84341	4.14688	2.95532	5.51932	6.26754	6.53852	1.62157	1.67243	2.1052	2.87563
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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