|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030266 ID=TCONS_00030266|Name=TCONS_00030266|organism=Clytia hemisphaerica|type=transcript|length=2519bp
CTTGGAAAGGTTTCATGCGAAAAGGATAAGAAAGTTATGGAGTACTTCCG
TGCTATGTCTTTATTCAGCTTtatcttttaaaaatcttttttttatattt
tagaaaaccaaaaagatgaaaaataagcTATGAAAATATTTGTGTAAAGA
TGGCGTCAGCAGTTACGACAGCAAAAGTAAACAACCAGAACCATTGTAAA
GAAGATACGGCACTCGacctcaaaaagaaaaatgagagCCTCAGCAAGGA
GGTTGAACGCCTCACCGCCCTCGTTAGCAAATCTGAACGTAAACGACGCA
AACAGAAAATTGTGTACGAGAAAAACATGGAAAATTTAAGTATACGGTTA
GTTGACTTTGAAAGTAATTTACGGAAAGAACAAAAAGAGATACAAGATTT
GATCTCAAAAAAAGAGCAACAGATCAAAGTGCGAGAGGAACTCGTTAAAA
CTCTACGAGATAAACTAACGCAGCAATTTTGTAACCAATGCGGCTGTGCA
AATCCGAAAGTCGACTCCATGGACGTGGACTGGGAACTAGATATCGATGA
AGATAAAAACgaagtcatcaaaaaattacCACCCCTAGATCTGCCGCCGC
CCGAAGAAAGCAAACAGATCAGTTTCACTAACCACCGCCCATTCCGCCCT
AAAAGTAAATTGTCGCCCGTGGCGGAAGAAAGTGAGATTTCGTTTGGTTC
TTCATTGCGTGATATTCACGCTGACCTAACACCAGATCGTTTCCACGCTG
CCTTGACTGCTTCGTTAGGAAGTTTACTGGATAATGTTGAAGATGGGGTG
GAAACACCAACCAATTCTATCGGAGGCGGGTCGAACGAGGACAATTCGAA
CGCCGAGGAGAAGTCTCCTGAAGACCAGTGCGATATTAATGAAGCTAACA
TTGAAGAGACTGTTTCTGTACTTGCTCCTGCTTTTGAGCAAGTTGTTGTT
AAGGAAAAGGTAGCTTCCCCTTCGAATGGTCTGTTTACTTTCAGTGACAG
ACTGAGCTCAAACATTTTATCTCTGGTGAATCAGAATTTAGCTCAAAAGA
AAACGAAGCGTATCGACTCTCCTAACAAAGGAAAAGAGAACATTTCTAAC
ATACAAAATTTCTGTGCGAATATCGTGACTAAAAATCTCTTAGAAGCTAT
GAATGAAATTTCGGCTTCTAAACGAAAAGAGTGTGTGAATTCGTCATCCA
CTCATGAACGCACCCCAACACTAGGGCCATCTTCAGACAAAATGAAGCGT
TTACATACTGCTGCTGTATCCTTCGTTGATCAGTTCATTTCCAATGATTT
TATGAGCGAATCGTTAAGTCAAAGATCACTCTCACCGAGAAGAGTACATC
CGATGTCTTCAGATGAAATACCGGATGAGATAAGTCAGGAAGATTCCTTT
CATACtagaaatgaaaaacaaagggaGCTCTTTGATCATGCAAGATTGGA
TACAGACATGAATCCCAATAACTCGACCTTGGTGACTGAACCTACTTTAG
ATGATGATAAATTTGTCGTTATCGGGGAGGAAGAACCAACCGAAATTGTG
AGTATTGAGACAAACGAGAAACGAACGAGCTTCAACGACAATGACCAGGA
ACTGAGTGAAAAACAAATACCCAATGAGGAGGCGAGCGATCAAAGAATAC
CCGACGACGAAAACGAAACGACCAACGAACAACGACAACCTACCGAGCCG
AATGATGACCGAACTTCGATGGAGGAACTGAACGGACATCTAAAATCTGA
CGAACCAAGTGAAAAACAAATTCCAGACAATCAAATAACCGAACAACAGA
TTCAGGACAAGCAACAACTGCACATCGAGCCAGCTAACGGAGAAAATGAA
AACGAGCATCAGCCGATGGATGATACGAGCGACCACAAGCGAACGAACGA
CGAAAATTCTCCACCAAATGACGCATCGCCCGATTCGAcgaaaagtaaga
aaaagaaaaaaaagaagaagaaaaaacgtAAAAGTGTTTGTAACGAATCA
GACGAATCGTTCGTTTCGGCTACCAGTGAAAACACTCAAGATACTTCGGC
TGATCAACCTATCATGGAACGTATAAAATCACCCGTTGAAGACAAATTTA
GCCTCGCGTTGGATGATCAGTTAGATTTGTTGGGTGAAAGTCCAACAAGC
CCTACCCATAGTACGTTAGGTGAACAGCTAAGTCAAACTACAAAAATGTA
ATGATTGTAACGTATGTTTCAGTTTGTGGGCcaattggtgttttttttta
gacTATTTTACTCGTTTTTAgatgatttttaaaagaaactttgattgata
aacttttttttattttgaaaattgagattttaagaatcttttctttttat
ttatccGATTACCATACTACAGGAATATTACtatactagtcattttatta
acacgaattgaaaaattttgtgtgaATAAAGACTCCCTTAATTCAAACCA
GTcgctgtttccttgaaaaagcagaaaattcGTATTAATTTCAAATCGTG
Cacatttcaaggccgttaa Run BLAST on NCBI protein sequence of TCONS_00030266-protein >TCONS_00030266-protein ID=TCONS_00030266-protein|Name=TCONS_00030266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=683bp
MASAVTTAKVNNQNHCKEDTALDLKKKNESLSKEVERLTALVSKSERKRR
KQKIVYEKNMENLSIRLVDFESNLRKEQKEIQDLISKKEQQIKVREELVK
TLRDKLTQQFCNQCGCANPKVDSMDVDWELDIDEDKNEVIKKLPPLDLPP
PEESKQISFTNHRPFRPKSKLSPVAEESEISFGSSLRDIHADLTPDRFHA
ALTASLGSLLDNVEDGVETPTNSIGGGSNEDNSNAEEKSPEDQCDINEAN
IEETVSVLAPAFEQVVVKEKVASPSNGLFTFSDRLSSNILSLVNQNLAQK
KTKRIDSPNKGKENISNIQNFCANIVTKNLLEAMNEISASKRKECVNSSS
THERTPTLGPSSDKMKRLHTAAVSFVDQFISNDFMSESLSQRSLSPRRVH
PMSSDEIPDEISQEDSFHTRNEKQRELFDHARLDTDMNPNNSTLVTEPTL
DDDKFVVIGEEEPTEIVSIETNEKRTSFNDNDQELSEKQIPNEEASDQRI
PDDENETTNEQRQPTEPNDDRTSMEELNGHLKSDEPSEKQIPDNQITEQQ
IQDKQQLHIEPANGENENEHQPMDDTSDHKRTNDENSPPNDASPDSTKSK
KKKKKKKKKRKSVCNESDESFVSATSENTQDTSADQPIMERIKSPVEDKF
SLALDDQLDLLGESPTSPTHSTLGEQLSQTTKM Run BLAST on NCBI transcript from alignment at sc0000803:47048..49566 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030266 ID=TCONS_00030266|Name=TCONS_00030266|organism=Clytia hemisphaerica|type=transcript|length=2519bp|location=Sequence derived from alignment at sc0000803:47048..49566 (Clytia hemisphaerica)
ttaacggccttgaaatgtGCACGATTTGAAATTAATACgaattttctgct
ttttcaaggaaacagcgACTGGTTTGAATTAAGGGAGTCTTTATtcacac
aaaatttttcaattcgtgttaataaaatgactagtataGTAATATTCCTG
TAGTATGGTAATCggataaataaaaagaaaagattcttaaaatctcaatt
ttcaaaataaaaaaaagtttatcaatcaaagtttcttttaaaaatcatcT
AAAAACGAGTAAAATAgtctaaaaaaaaacaccaattgGCCCACAAACTG
AAACATACGTTACAATCATTACATTTTTGTAGTTTGACTTAGCTGTTCAC
CTAACGTACTATGGGTAGGGCTTGTTGGACTTTCACCCAACAAATCTAAC
TGATCATCCAACGCGAGGCTAAATTTGTCTTCAACGGGTGATTTTATACG
TTCCATGATAGGTTGATCAGCCGAAGTATCTTGAGTGTTTTCACTGGTAG
CCGAAACGAACGATTCGTCTGATTCGTTACAAACACTTTTacgttttttc
ttcttcttttttttctttttcttacttttcgTCGAATCGGGCGATGCGTC
ATTTGGTGGAGAATTTTCGTCGTTCGTTCGCTTGTGGTCGCTCGTATCAT
CCATCGGCTGATGCTCGTTTTCATTTTCTCCGTTAGCTGGCTCGATGTGC
AGTTGTTGCTTGTCCTGAATCTGTTGTTCGGTTATTTGATTGTCTGGAAT
TTGTTTTTCACTTGGTTCGTCAGATTTTAGATGTCCGTTCAGTTCCTCCA
TCGAAGTTCGGTCATCATTCGGCTCGGTAGGTTGTCGTTGTTCGTTGGTC
GTTTCGTTTTCGTCGTCGGGTATTCTTTGATCGCTCGCCTCCTCATTGGG
TATTTGTTTTTCACTCAGTTCCTGGTCATTGTCGTTGAAGCTCGTTCGTT
TCTCGTTTGTCTCAATACTCACAATTTCGGTTGGTTCTTCCTCCCCGATA
ACGACAAATTTATCATCATCTAAAGTAGGTTCAGTCACCAAGGTCGAGTT
ATTGGGATTCATGTCTGTATCCAATCTTGCATGATCAAAGAGCtcccttt
gtttttcatttctaGTATGAAAGGAATCTTCCTGACTTATCTCATCCGGT
ATTTCATCTGAAGACATCGGATGTACTCTTCTCGGTGAGAGTGATCTTTG
ACTTAACGATTCGCTCATAAAATCATTGGAAATGAACTGATCAACGAAGG
ATACAGCAGCAGTATGTAAACGCTTCATTTTGTCTGAAGATGGCCCTAGT
GTTGGGGTGCGTTCATGAGTGGATGACGAATTCACACACTCTTTTCGTTT
AGAAGCCGAAATTTCATTCATAGCTTCTAAGAGATTTTTAGTCACGATAT
TCGCACAGAAATTTTGTATGTTAGAAATGTTCTCTTTTCCTTTGTTAGGA
GAGTCGATACGCTTCGTTTTCTTTTGAGCTAAATTCTGATTCACCAGAGA
TAAAATGTTTGAGCTCAGTCTGTCACTGAAAGTAAACAGACCATTCGAAG
GGGAAGCTACCTTTTCCTTAACAACAACTTGCTCAAAAGCAGGAGCAAGT
ACAGAAACAGTCTCTTCAATGTTAGCTTCATTAATATCGCACTGGTCTTC
AGGAGACTTCTCCTCGGCGTTCGAATTGTCCTCGTTCGACCCGCCTCCGA
TAGAATTGGTTGGTGTTTCCACCCCATCTTCAACATTATCCAGTAAACTT
CCTAACGAAGCAGTCAAGGCAGCGTGGAAACGATCTGGTGTTAGGTCAGC
GTGAATATCACGCAATGAAGAACCAAACGAAATCTCACTTTCTTCCGCCA
CGGGCGACAATTTACTTTTAGGGCGGAATGGGCGGTGGTTAGTGAAACTG
ATCTGTTTGCTTTCTTCGGGCGGCGGCAGATCTAGGGGTGgtaatttttt
gatgacttcGTTTTTATCTTCATCGATATCTAGTTCCCAGTCCACGTCCA
TGGAGTCGACTTTCGGATTTGCACAGCCGCATTGGTTACAAAATTGCTGC
GTTAGTTTATCTCGTAGAGTTTTAACGAGTTCCTCTCGCACTTTGATCTG
TTGCTCTTTTTTTGAGATCAAATCTTGTATCTCTTTTTGTTCTTTCCGTA
AATTACTTTCAAAGTCAACTAACCGTATACTTAAATTTTCCATGTTTTTC
TCGTACACAATTTTCTGTTTGCGTCGTTTACGTTCAGATTTGCTAACGAG
GGCGGTGAGGCGTTCAACCTCCTTGCTGAGGctctcatttttctttttga
ggtCGAGTGCCGTATCTTCTTTACAATGGTTCTGGTTGTTTACTTTTGCT
GTCGTAACTGCTGACGCCATCTTTACACAAATATTTTCATAgcttatttt
tcatctttttggttttctaaaatataaaaaaaagatttttaaaagataAA
GCTGAATAAAGACATAGCACGGAAGTACTCCATAACTTTCTTATCCTTTT
CGCATGAAACCTTTCCAAG Coding sequence (CDS) from alignment at sc0000803:47048..49566 >TCONS_00030266 ID=TCONS_00030266|Name=TCONS_00030266|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0000803:47048..49566 (Clytia hemisphaerica)
TTACATTTTTGTAGTTTGACTTAGCTGTTCACCTAACGTACTATGGGTAG
GGCTTGTTGGACTTTCACCCAACAAATCTAACTGATCATCCAACGCGAGG
CTAAATTTGTCTTCAACGGGTGATTTTATACGTTCCATGATAGGTTGATC
AGCCGAAGTATCTTGAGTGTTTTCACTGGTAGCCGAAACGAACGATTCGT
CTGATTCGTTACAAACACTTTTacgttttttcttcttcttttttttcttt
ttcttacttttcgTCGAATCGGGCGATGCGTCATTTGGTGGAGAATTTTC
GTCGTTCGTTCGCTTGTGGTCGCTCGTATCATCCATCGGCTGATGCTCGT
TTTCATTTTCTCCGTTAGCTGGCTCGATGTGCAGTTGTTGCTTGTCCTGA
ATCTGTTGTTCGGTTATTTGATTGTCTGGAATTTGTTTTTCACTTGGTTC
GTCAGATTTTAGATGTCCGTTCAGTTCCTCCATCGAAGTTCGGTCATCAT
TCGGCTCGGTAGGTTGTCGTTGTTCGTTGGTCGTTTCGTTTTCGTCGTCG
GGTATTCTTTGATCGCTCGCCTCCTCATTGGGTATTTGTTTTTCACTCAG
TTCCTGGTCATTGTCGTTGAAGCTCGTTCGTTTCTCGTTTGTCTCAATAC
TCACAATTTCGGTTGGTTCTTCCTCCCCGATAACGACAAATTTATCATCA
TCTAAAGTAGGTTCAGTCACCAAGGTCGAGTTATTGGGATTCATGTCTGT
ATCCAATCTTGCATGATCAAAGAGCtccctttgtttttcatttctaGTAT
GAAAGGAATCTTCCTGACTTATCTCATCCGGTATTTCATCTGAAGACATC
GGATGTACTCTTCTCGGTGAGAGTGATCTTTGACTTAACGATTCGCTCAT
AAAATCATTGGAAATGAACTGATCAACGAAGGATACAGCAGCAGTATGTA
AACGCTTCATTTTGTCTGAAGATGGCCCTAGTGTTGGGGTGCGTTCATGA
GTGGATGACGAATTCACACACTCTTTTCGTTTAGAAGCCGAAATTTCATT
CATAGCTTCTAAGAGATTTTTAGTCACGATATTCGCACAGAAATTTTGTA
TGTTAGAAATGTTCTCTTTTCCTTTGTTAGGAGAGTCGATACGCTTCGTT
TTCTTTTGAGCTAAATTCTGATTCACCAGAGATAAAATGTTTGAGCTCAG
TCTGTCACTGAAAGTAAACAGACCATTCGAAGGGGAAGCTACCTTTTCCT
TAACAACAACTTGCTCAAAAGCAGGAGCAAGTACAGAAACAGTCTCTTCA
ATGTTAGCTTCATTAATATCGCACTGGTCTTCAGGAGACTTCTCCTCGGC
GTTCGAATTGTCCTCGTTCGACCCGCCTCCGATAGAATTGGTTGGTGTTT
CCACCCCATCTTCAACATTATCCAGTAAACTTCCTAACGAAGCAGTCAAG
GCAGCGTGGAAACGATCTGGTGTTAGGTCAGCGTGAATATCACGCAATGA
AGAACCAAACGAAATCTCACTTTCTTCCGCCACGGGCGACAATTTACTTT
TAGGGCGGAATGGGCGGTGGTTAGTGAAACTGATCTGTTTGCTTTCTTCG
GGCGGCGGCAGATCTAGGGGTGgtaattttttgatgacttcGTTTTTATC
TTCATCGATATCTAGTTCCCAGTCCACGTCCATGGAGTCGACTTTCGGAT
TTGCACAGCCGCATTGGTTACAAAATTGCTGCGTTAGTTTATCTCGTAGA
GTTTTAACGAGTTCCTCTCGCACTTTGATCTGTTGCTCTTTTTTTGAGAT
CAAATCTTGTATCTCTTTTTGTTCTTTCCGTAAATTACTTTCAAAGTCAA
CTAACCGTATACTTAAATTTTCCATGTTTTTCTCGTACACAATTTTCTGT
TTGCGTCGTTTACGTTCAGATTTGCTAACGAGGGCGGTGAGGCGTTCAAC
CTCCTTGCTGAGGctctcatttttctttttgaggtCGAGTGCCGTATCTT
CTTTACAATGGTTCTGGTTGTTTACTTTTGCTGTCGTAACTGCTGACGCC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030266-exon-sc0000803-1491911889:47048..49566 | TCONS_00030266-exon-sc0000803-1491911889:47048..49566 | Clytia hemisphaerica | exon |
| TCONS_00030266-exon-sc0000803-1510915933:47048..49566 | TCONS_00030266-exon-sc0000803-1510915933:47048..49566 | Clytia hemisphaerica | exon |
| TCONS_00030266-exon-sc0000803-1575043694:47048..49566 | TCONS_00030266-exon-sc0000803-1575043694:47048..49566 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000803 | supercontig | sc0000803:47048..49566 . |
Blast
The following BLAST results are available for this feature:
|
