TCONS_00030337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030337
Unique NameTCONS_00030337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030337 ID=TCONS_00030337|Name=TCONS_00030337|organism=Clytia hemisphaerica|type=transcript|length=346bp
gtaaacagaaaagaaactttGGTAGATTTTTTTGACTTCTGACAAGTTTG
AGCTGACagaagaaagtttttgaatctcATCTGTGGAAACTATGTTGCAT
ACAAACAAAGTGAAAGAATTTATTGCTCAAAAGAAGGTCAAGATGTAAGT
GTAATTAAATAACCTTGCTGACGTTtttatcaaaccaaaacaaacagaaa
gttTCTTTCTGGATCTTTGTGTATGTTTGTTTTTCGTCTgttttttatct
tgctttttttATGCTCTCAAAGTCCAAATACATCCAAAATAACCTTTACA
ATGAACAGCATgtaaccatatttctttttcatgttttttagtgTTT
Run BLAST on NCBI

transcript from alignment at sc0000809:103839..104184

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030337 ID=TCONS_00030337|Name=TCONS_00030337|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at sc0000809:103839..104184 (Clytia hemisphaerica)
AAAcactaaaaaacatgaaaaagaaatatggttacATGCTGTTCATTGTA
AAGGTTATTTTGGATGTATTTGGACTTTGAGAGCATaaaaaaagcaagat
aaaaaacAGACGAAAAACAAACATACACAAAGATCCAGAAAGAaactttc
tgtttgttttggtttgataaaAACGTCAGCAAGGTTATTTAATTACACTT
ACATCTTGACCTTCTTTTGAGCAATAAATTCTTTCACTTTGTTTGTATGC
AACATAGTTTCCACAGATgagattcaaaaactttcttctGTCAGCTCAAA
CTTGTCAGAAGTCAAAAAAATCTACCaaagtttcttttctgtttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017382XLOC_017382Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030337-exon-sc0000809-1491911889:103839..104184TCONS_00030337-exon-sc0000809-1491911889:103839..104184Clytia hemisphaericaexon
TCONS_00030337-exon-sc0000809-1510915933:103839..104184TCONS_00030337-exon-sc0000809-1510915933:103839..104184Clytia hemisphaericaexon
TCONS_00030337-exon-sc0000809-1575043694:103839..104184TCONS_00030337-exon-sc0000809-1575043694:103839..104184Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000809supercontigsc0000809:103839..104184 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.63564	1.82759	1.79268	1.15679	0	0	0	0.62338	1.05297	0.303392	0.787086	0.987341	0.605262	0.92075	0.340631	0.554263	0.207953	0.935745	0.284092	1.78302	5.64077	5.67998	2.08317	2.94542	0.278035	0	4.14312	4.29681	2.79036	5.78544
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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