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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030561 ID=TCONS_00030561|Name=TCONS_00030561|organism=Clytia hemisphaerica|type=transcript|length=2655bpRun BLAST on NCBI transcript from alignment at sc0000829:112226..127033- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00030561 ID=TCONS_00030561|Name=TCONS_00030561|organism=Clytia hemisphaerica|type=transcript|length=14808bp|location=Sequence derived from alignment at sc0000829:112226..127033- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00030561 vs. Swiss-Prot (Human)
Match: SEM5B (Semaphorin-5B OS=Homo sapiens GN=SEMA5B PE=2 SV=4) HSP 1 Score: 112.079 bits (279), Expect = 4.842e-25 Identity = 97/337 (28.78%), Postives = 143/337 (42.43%), Query Frame = 2
Query: 983 CKEESKWGSWTGTNDQCSTSCG-GGRIRQRRLC-----LTGQNCIGDEARDIDCNENIPCPVDGGFTSWTNWTVCSTTCGSGLRMRVRECSNPSPLYGGKKCVGVTNETIKCNNKEQCSGTYVSSFGETCNLTCVDRGLVCVPFERKSEIEIQEIFKETFKQGCNNVTIQNVVDIETYGLVYMDRSGDCILEPQNGDTNFCRNESTKTFHRMCNCKSPGDLTYG--PWTSWGSCNKDCGYGTKSRYRTCLNESKECE----VDETQQQKNCNEFACPVDGIHGGYDDWSTWSPCTPTCGQNRTRSRRRECDKPFPSLGGSDCIGPSRIEEQCSNASC 1957
C W W+ + CSTSCG G ++RQR G+ C+G + CNEN PCPV + SW +W+ CS+ CG G++ R R C N G C+G E CN E C V R P+ + + ++ F+ C + +GL + R + P +G + C ++ SP ++ G W W SC++DC G + R RTC N V + + ++CN ACPV G + W++WSPC+ +CG + R R C P PS G C+G E C+ +C
Sbjct: 661 CSRNGAWTPWS-SWALCSTSCGIGFQVRQRSCSNPAPRHGGRICVGKSREERFCNENTPCPVPIFWASWGSWSKCSSNCGGGMQSRRRACEN------GNSCLGCGVEFKTCN-PEGCPE--------------VRRNTPWTPWLPVNVTQGGARQEQRFRFTCRAPLA------DPHGLQFGRRRTETRTCPADGSGS-CDTDALVEVLLRSGSTSPHTVSGGWAAWGPWSSCSRDCELGFRVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPV---RGAWSCWTSWSPCSASCGGGHYQ-RTRSCTSPAPSPGEDICLGLHTEEALCATQAC 964 The following BLAST results are available for this feature:
BLAST of TCONS_00030561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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