TCONS_00030600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030600
Unique NameTCONS_00030600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030600 ID=TCONS_00030600|Name=TCONS_00030600|organism=Clytia hemisphaerica|type=transcript|length=428bp
AAAAATTGTTCAGGTGGCAGCACGCTGCCAGTTTCGATCAAAGAACAttg
gtttgcaaaaaaagagttaaaaatatcGGCCTTCTCAGANATTTGGGACA
AAGTTAGAAAAGATGTTAAGGATACATTCAGAGAGAAGGGCGACGCGATC
TTCAACATTGAGCCCCAGGAAGGTAGTGTCCCAATCAATGGCATTCAGAG
CAAGCATGATTCCCCTTTGGTCAGCGCGAGAGAAGTTCCAAATCTTGCGT
TTATAAGctggagggaatttaatttgataaTTTATTCTAACAAAAGGTAT
CTGGTGGTGACAACGAGGGAAGGTAAAACCCCAGATTCTAAAATAGGTGT
tcgcgaagatgaaaaaataagatctataCAGGATGGAGAGCACCCAGGCT
TCAAGTGAGTTGGCTGGTCAATCAGTTG
Run BLAST on NCBI

protein sequence of TCONS_00030600-protein

>TCONS_00030600-protein ID=TCONS_00030600-protein|Name=TCONS_00030600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
KNCSGGSTLPVSIKEHWFAKKELKISAFSXIWDKVRKDVKDTFREKGDAI
FNIEPQEGSVPINGIQSKHDSPLVSAREVPNLAFISWREFNLIIYSNKRY
LVVTTREGKTPDSKIGVREDEKIRSIQDGEHPGFK
Run BLAST on NCBI

transcript from alignment at sc0000831:107392..107819

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030600 ID=TCONS_00030600|Name=TCONS_00030600|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at sc0000831:107392..107819 (Clytia hemisphaerica)
CAACTGATTGACCAGCCAACTCACTTGAAGCCTGGGTGCTCTCCATCCTG
tatagatcttattttttcatcttcgcgaACACCTATTTTAGAATCTGGGG
TTTTACCTTCCCTCGTTGTCACCACCAGATACCTTTTGTTAGAATAAAtt
atcaaattaaattccctccagCTTATAAACGCAAGATTTGGAACTTCTCT
CGCGCTGACCAAAGGGGAATCATGCTTGCTCTGAATGCCATTGATTGGGA
CACTACCTTCCTGGGGCTCAATGTTGAAGATCGCGTCGCCCTTCTCTCTG
AATGTATCCTTAACATCTTTTCTAACTTTGTCCCAAATNTCTGAGAAGGC
CgatatttttaactctttttttgcaaaccaaTGTTCTTTGATCGAAACTG
GCAGCGTGCTGCCACCTGAACAATTTTT

Coding sequence (CDS) from alignment at sc0000831:107392..107819

>TCONS_00030600 ID=TCONS_00030600|Name=TCONS_00030600|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000831:107392..107819 (Clytia hemisphaerica)
TCACTTGAAGCCTGGGTGCTCTCCATCCTGtatagatcttattttttcat
cttcgcgaACACCTATTTTAGAATCTGGGGTTTTACCTTCCCTCGTTGTC
ACCACCAGATACCTTTTGTTAGAATAAAttatcaaattaaattccctcca
gCTTATAAACGCAAGATTTGGAACTTCTCTCGCGCTGACCAAAGGGGAAT
CATGCTTGCTCTGAATGCCATTGATTGGGACACTACCTTCCTGGGGCTCA
ATGTTGAAGATCGCGTCGCCCTTCTCTCTGAATGTATCCTTAACATCTTT
TCTAACTTTGTCCCAAATNTCTGAGAAGGCCgatatttttaactcttttt
ttgcaaaccaaTGTTCTTTGATCGAAACTGGCAGCGTGCTGCCACCTGAA
CAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017545XLOC_017545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030600-exon-sc0000831-1491911889:107392..107819TCONS_00030600-exon-sc0000831-1491911889:107392..107819Clytia hemisphaericaexon
TCONS_00030600-exon-sc0000831-1510915933:107392..107819TCONS_00030600-exon-sc0000831-1510915933:107392..107819Clytia hemisphaericaexon
TCONS_00030600-exon-sc0000831-1575043694:107392..107819TCONS_00030600-exon-sc0000831-1575043694:107392..107819Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030600-proteinTCONS_00030600-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000831supercontigsc0000831:107392..107819 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.485996	0.734229	0.544017	0.255023	3.89209	0.372479	3.15974	2.4227	1.12989	1.04666	0.293198	0.963504	1.44261	0.634832	0.28501	0.399665	0.394568	0.435411	3.41279	3.16024	1.27815	0.911211	0.275058	0.973794	1.88659	0.734704	0.929581	0.873162	1.33805	0.516738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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