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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030635 ID=TCONS_00030635|Name=TCONS_00030635|organism=Clytia hemisphaerica|type=transcript|length=1112bp
GTTGAAGTTGTGCAGTCTGTTGTTAATCTAGCTACATCCTGATCTTGTTC
ACCGCATGCTGTCTCTTGTTCGACCATCACTGCTTGGTCTAAATATAATA
AATTCAAATCAATTCGTTGTAAGCAAAAGACCCCAAGTTTTCCTCCCAAT
CTTCACGAACTTGCAAACGAATGAAAGCATTGAACAACATCTGCTCAGCA
TGTCGATTGGACGTCCTCTTGCTAACCTCCTTGAAGAAATGGAATGCACG
CTCTTCGGCCTCCGCGTTACAGGACGACAAGTTAATGATACGGAACTGCT
GGGATGCGTGGCTAATCAAGGCGTGGTAATACTGTCCGAAAAGCTTTCTC
TCTGTCATACCCCTTGGAATCTTGATCAACCGTACAACATCTATAGCATG
CAGGAACGTTAAATTGTGGAATCGGAGGATAGTTTTCGATGTTCTATCCT
TTTCCTCGGCATACATAATCTCTTGGATTTCACCCAACTGTTGAAGAATT
TTGAGGTTGCAAGGCATTGCCTGGTAGATGTTTTTGATGTGACCCGCTAT
CGTGTGAAGTGGCTCTACTGGCAAAATTTCGTAGTCTTCAAGACCAACAT
CTTTCAACTCCGTCTTCCGGGATTCGTACAAAAATGCAGGCAGATGGTGT
ATTCCAGTCATTTCGTTGTCGTATTTTCCTTTCAACACGTCTTTATTTTC
GCCCTTTGTGAATTTAACCTCGCGTTCGTGGAGCTCACCGATGATATCCG
GCTTGNTACGTCTTTATTTTTGCCCTTTGTGATTCTTTCGGCAGGATTTA
CGATGCCGTTTACGATCGATTGTCTTCCGTAGCTAAAAAAAAGATAATGC
TATGGGAGTTGTTTGTGATTCAATCATGAACACCGGGAACAAGGGAGAAA
ACAATTTGATGAAATATTTGcaataaataatattttttgatcgaaataaa
aattatcTTACCGTGTCATTGTTAGCTTGTCTATCCTCTCTTGCACTGTC
TGCCGCTCGCAATTCAACAAATGGGCCAAGTCTTTCCCTCTTGATGCTTT
CATAGGACAATGCCAACAAAAATGATTACCCCCTTTTTGCTGTCCTGCCT
CAAGTTGACAGG Run BLAST on NCBI transcript from alignment at sc0000833:134009..136202+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030635 ID=TCONS_00030635|Name=TCONS_00030635|organism=Clytia hemisphaerica|type=transcript|length=2194bp|location=Sequence derived from alignment at sc0000833:134009..136202+ (Clytia hemisphaerica)
GTTGAAGTTGTGCAGTCTGTTGTTAATCTAGCTACATCCTGATCTTGTTC
ACCGCATGCTGTCTCTTGTTCGACCATCACTGCTTGGTCTAAATATAATA
AATTCAAATCAATTCGTTGTAAGCAAAAGGTTAGTATTTCTAGCAGCTGT
CTACTTGGTTGAAACTGcttttaaaataaatctatCATTACCTTCATCTC
CCAGACTAAGGTTCTCTTCATCTCCAAATGCCTGAAAAGAAATCGATTGA
TGTCTTTATTTGTGATGGGACATTTTGCATTGCATATAGCGAGGGGAGGT
TAGGTACTTCAAAGTAATAGTGGGCTAAatttctggctgaactttgcttt
ttgataatttttgacacCGAGTTCAATGAAGACTAGAAACAtgagaaata
aatcaaaattcgaaataacattataaaatcatttgGAGTTGAAAAGTATT
CCCAATTCATAGCACATCTATACAgaccaaaacaaaatcaagtGCGGCAA
GGTGAtagaaaaagcttttgaaacaatgaaagTAGAGTTTATACCAGACT
GCtcaattttctatgttttccaTCTGCGTTGAACTTGACCATCTCTTCAA
GATTATTAAGAGAAGGTTTTTCAAACTAACCTGTACTCATCATTCATGGT
AGTACTTCGAAAGTGTCTGGGTGGAGGGAATTTTATGCAATCGTCAAAGT
CATGGAAAATGATGCCATCAGGGGTCTCCTCCCACACGTTCATGTCGAGA
TAGTCAGAGATTCTCTCTAAATGCGCCTGCCATGCCCTGGGAAACATTTC
GATGACCCAAAATGGAACGGATGTGTTATTTCTGTCTGGTTTGAGTAGGT
CTGCATGTTTGCTGATAAGATTTCTTCTCTCTATTCTCACAGACCCCAAG
TTTTCCTCCCAATCTTCACGAACTTGCAAACGAATGAAAGCATTGAACAA
CATCTGCTCAGCATGTCGATTGGACGTCCTCTTGCTAACCTCCTTGAAGA
AATGGAATGCACGCTCTTCGGCCTCCGCGTTACAGGACGACAAGTTAATG
ATACGGAACTGCTGGGATGCGTGGCTAATCAAGGCGTGGTAATACTGTCC
GAAAAGCTTTCTCTCTGTCATACCCCTTGGAATCTTGATCAACCGTACAA
CATCTATAGCATGCAGGAACGTTAAATTGTGGAATCGGAGGATAGTTTTC
GATGTTCTATCCTTTTCCTCGGCATACATAATCTCTTGGATTTCACCCAA
CTGTTGAAGAATTTTGAGGTATGGTTTCTCTATCTTATCCTTCATGTAGA
TGGTAACGTCAATTAGACTGCGATGATAGTCTGTACACCGTTTCGCATCT
TTCCCTAGATTtttaaaagttgatattttaATCATAATCAAATACATTAG
ACTGAGTTATGctattagttacacggtcttctTTACACGGGATTGAACCT
TTAAGGTGGCATAGCTTATGTTTTTTTAACATATGGAATCTCAAAGTTCT
CCTTTAAACGAGCGAGTTCTCAGTTTATTTACCTGAAAACGAAGCATCGA
TCGCATCTTCCAACtcttgcttttcttttttcgaCAGGTTGCAAGGCATT
GCCTGGTAGATGTTTTTGATGTGACCCGCTATCGTGTGAAGTGGCTCTAC
TGGCAAAATTTCGTAGTCTTCAAGACCAACATCTTTCAACTCCGTCTTCC
GGGATTCGTACAAAAATGCAGGCAGATGGTGTATTCCAGTCATTTCGTTG
TCGTATTTTCCTTTCAACACGTCTTTATTTTCGCCCTTTGTGAATTTAAC
CTCGCGTTCGTGGAGCTCACCGATGATATCCGGCTTGNTACGTCTTTATT
TTTGCCCTTTGTGATTCTTTCGGCAGGATTTACGATGCCGTTTACGATCG
ATTGTCTTCCGTAGCTAAAAAAAAGATAATGCTATGGGAGTTGTTTGTGA
TTCAATCATGAACACCGGGAACAAGGGAGAAAACAATTTGATGAAATATT
TGcaataaataatattttttgatcgaaataaaaattatcTTACCGTGTCA
TTGTTAGCTTGTCTATCCTCTCTTGCACTGTCTGCCGCTCGCAATTCAAC
AAATGGGCCAAGTCTTTCCCTCTTGATGCTTTCATAGGACAATGCCAACA
AAAATGATTACCCCCTTTTTGCTGTCCTGCCTCAAGTTGACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030635-exon-sc0000833-1491911889:134009..134137 | TCONS_00030635-exon-sc0000833-1491911889:134009..134137 | Clytia hemisphaerica | exon |
| TCONS_00030635-exon-sc0000833-1510915933:134009..134137 | TCONS_00030635-exon-sc0000833-1510915933:134009..134137 | Clytia hemisphaerica | exon |
| TCONS_00030635-exon-sc0000833-1575043694:134009..134137 | TCONS_00030635-exon-sc0000833-1575043694:134009..134137 | Clytia hemisphaerica | exon |
| TCONS_00030635-exon-sc0000833-1491911889:134901..135276 | TCONS_00030635-exon-sc0000833-1491911889:134901..135276 | Clytia hemisphaerica | exon |
| TCONS_00030635-exon-sc0000833-1510915933:134901..135276 | TCONS_00030635-exon-sc0000833-1510915933:134901..135276 | Clytia hemisphaerica | exon |
| TCONS_00030635-exon-sc0000833-1575043694:134901..135276 | TCONS_00030635-exon-sc0000833-1575043694:134901..135276 | Clytia hemisphaerica | exon |
| TCONS_00030635-exon-sc0000833-1491911889:135596..136202 | TCONS_00030635-exon-sc0000833-1491911889:135596..136202 | Clytia hemisphaerica | exon |
| TCONS_00030635-exon-sc0000833-1510915933:135596..136202 | TCONS_00030635-exon-sc0000833-1510915933:135596..136202 | Clytia hemisphaerica | exon |
| TCONS_00030635-exon-sc0000833-1575043694:135596..136202 | TCONS_00030635-exon-sc0000833-1575043694:135596..136202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000833 | supercontig | sc0000833:134009..136202 + |
Blast
The following BLAST results are available for this feature:
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