TCONS_00030689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030689
Unique NameTCONS_00030689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030689 ID=TCONS_00030689|Name=TCONS_00030689|organism=Clytia hemisphaerica|type=transcript|length=1368bp
GTGGATGTTCCGATAAGCGTTAAAAACTCATTTCTTAAGTATctaggaaa
atttcaaagttattttggGGTTAAACTTACACATATTACTTCTTTAAGGA
TGCACTTCGAAAATGATGAGGTCTTGGAAAATCGATAACGTCGTCGTGAT
CGTGAAACATGATTCCCTCGGCTACCTCTTGCCAAGCTTTCATTTGAAGG
AACTCTGGAATTCTTTGAAGGTGGCATTGCCAggcttttgggtatttttc
taGTAGGTGAAATGAAAAAAGTGTGTTTTTCCGTCTCGGCTTAAGAAGCT
CCGCATGTTTACTAATTTCGTTTTTCTCGTTTTTTTGTATATAACCAATA
TTCTCATCCCAATCATCGTGGACTTGAAGGCGTAAAAAACAGTTGGTTAG
CACATTTTCAGGATGGTGATTGGACGTGTGTTTACTAACTGCCTTCATGA
AACAGAAGCAGCGTCCCTCGTCCTCCGCATTTGCTGCACTCAGATCTATT
ATCCTGAACTGTTGTGGTGCATggtcaatcaaggcatgaaaatACTGCCC
ATACAGCTTTCGTTCCGTAATCTTTTTGGTTTTCGCTATCATGTCGATCA
AAGATAATGCATGGAGAAAGGTGAGGTTATGTAATCTCAAAATTCGTTTT
GAAGACCTCTTCGATTCTTCGCCGTACACAATTTCTTAGATTTCGCTCAT
CTGATCCAGCAGCTCTACGTAGCGGGGCTCAATTTTTCTTTGCATATAGT
TTATTATATTTACAAGGCTCTTTCTATAATCGGCGGCCTTTTTTATTTCT
CCCTTAAAAGATATATCAACTGCATCTTCAAATATGCCTTTTTCTTTCTG
GTTTAGATGAGCTGGGATTTCCTGGTATAAGTTCTTGATATGTCCTGCTT
TTGTGTGGAGTGGCTCTACCGGTAGTATCTCGTATGATTCAAGTCCCGTT
TTGCTCATATCTCTTTGAGCCGAATTGTACAGCACTGCTGGAACGTGATG
GATTCCGATCATCTCGTTGTCGAATTTGGCCTTCAAATCGGCTTTCTTCT
CACCATCTCTAAAATCAGCACCAAGTTCGTGTAACACGCCGACGATTTCT
GGCTTGCTGATTTTGTCCGAGGGATTTACAACATGGTTAATGATTGCATT
TTGACCGTNTTTCTGGCTTGCTGATTTTGTCCGAGGGATTTACAACATGT
TTAATGATTGCATTTTGACCGTAACTGAAGTTagggaaaaataaaataaa
atgtatttttattcCTTGTGTACTtcccttttttaacttttaataaCGTT
GAAATACGCCTACCGCCATCTTGCCTCAAAAATTATATCCCGGATTAAAG
Agaaattttgattgattg
Run BLAST on NCBI

transcript from alignment at sc0000837:78544..82632+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030689 ID=TCONS_00030689|Name=TCONS_00030689|organism=Clytia hemisphaerica|type=transcript|length=4089bp|location=Sequence derived from alignment at sc0000837:78544..82632+ (Clytia hemisphaerica)
GTGGATGTTCCGATAAGCGTTAAAAACTCATTTCTTAAGTATctaggaaa
atttcaaagttattttggGGTTAAACTTACACATATTACTTCTTTAAGGA
TGCACTTCGAAAATGATGAGGTCTTGGAAAATCGATAACGTCGTCGTGAT
CGTGAAACATGATTCCCTCGGCTACCTCTTGCCAAGCTTTCATTTGAAGG
AACTCTGGAATTCTTTGAAGGTGGCATTGCCAggcttttgggtatttttc
taGTAGGTGAAATGAAAAAAGTGTGTTTTTCCGTCTCGGCTTAAGAAGCT
CCGCATGTTTACTAATTTCGTTTTTCTCGTTTTTTTGTATATAACCAATA
TTCTCATCCCAATCATCGTGGACTTGAAGGCGTAAAAAACAGTTGGTTAG
CACATTTTCAGGATGGTGATTGGACGTGTGTTTACTAACTGCCTTCATGA
AACAGAAGCAGCGTCCCTCGTCCTCCGCATTTGCTGCACTCAGATCTATT
ATCCTGAACTGTTGTGGTGCATggtcaatcaaggcatgaaaatACTGCCC
ATACAGCTTTCGTTCCGTAATCTTTTTGGTTTTCGCTATCATGTCGATCA
AAGATAATGCATGGAGAAAGGTGAGGTTATGTAATCTCAAAATTCGTTTT
GAAGACCTCTTCGATTCTTCGCCGTACACAATTTCTTAGATTTCGCTCAT
CTGATCCAGCAGCTCTACGTAGCGGGGCTCAATTTTTCTTTGCATATAGT
TTATTATATTTACAAGGCTCTTTCTATAATCGGCGGCCTTTTTTATTTCT
CCCTTAAAAGATATATCAACTGCATCTTCAAATATGCCTTTTTCTTTCTG
GTTTAGATGAGCTGGGATTTCCTGGTATAAGTTCTTGATATGTCCTGCTA
TTGTGTGgagtataataataataatttatttacaaCCACCCATTACTGGG
TAAGGTTGGACATAGAGTCATGACTCTCGCCAATGAGGCCTATTCACTTC
AGAGAGTTACGACTATATGTCGagctatcaaaaaagaaaaaaaaattcaa
aattattttttcttgctTAAGGCAAGAGTAAAATATTGGtttaatgaaac
atttttaaactcCATAGCTTGGTCAAGTAACGATTTCGTTGGCCGACCTC
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNAGTTTGGCATCTGTTTTCCATGGAGGTGGTTGAGATTCAGATGT
CATTGTAGGAAAGTAGATATTGGCAGATTCTTTGATcgtgtttacaagtt
tttcgTTTAGAAAATCGTTCGACTCTGAGTTAAGAACGTCATTAGAGTTA
AGCTTTCGTGAGACATCATCTTTGAAAAGTCCAGTCATTGCTGGGGTGAC
TGCTTCGAAATCGATTCTCTTTTGACGTTTGGTATGGGTTCGGTTGATGT
ATCTTGCTTTCTTTGATGTTGGTGTACAAAGGTGTGCAACAACAAGACGG
TGGTCGCTATCAAAGTCGAAAGAGTTAAACACGCGACAGTTTGTAACATA
TTTACGTAACCAACTTGCACAGAGGATAAAATCGTATACCTTTTTCGTCT
TTCCATCTGGGGAGTGCCACGTAATTCGTCTGCAATTTTTATGCGTAAAC
CAAGTATTCAATACAGACAATTTATTCAGTTCAAAGAATTCGTGGAATCG
TTCTCCATTGTCATTAACAATCAAATCGTTAATTATACTTCCTTCTCGTA
ACGAAGTGTTCGACCAAGCGCCAGATGTAGAAGCGTTGAAATCTCCAATG
TAAATCAGTTTTTGGTTCTTTTTCAATGATTTAATTTGTTTATTCAATGT
TCTATAAAACAAATTCTTTGACGACTCGGTGCTTTCCTCTGTAGGAGCGT
AAcagtttattattttcaatgagCAGCTACGGACGATTGCATCAACAACA
ATAATTCGAGCATCTACTGGTATTACTTCAACAATTTCTATCGACGAGTC
TACTTTAATAACAATACCAACACCATGGGTTCGTTTGTTACTATGTCCCG
ACCAATGTACCTCGTATTTTTTGCCAGAGTTCGATTTAATCAGAGCTGAT
CCTTTGTTTAGACGTCGAACTTTGTGTGGAGTGGCTCTACCGGTAGTATC
TCGTATGATTCAAGTCCCGTTTTGCTCATATCTCTTTGAGCCGAATTGTA
CAGCACTGCTGGAACGTGATGGATTCCGATCATCTCGTTGTCGAATTTGG
CCTTCAAATCGGCTTTCTTCTCACCATCTCTAAAATCAGCACCAAGTTCG
TGTAACACGCCGACGATTTCTGGCTTGCTGATTTTGTCCGAGGGATTTAC
AACATGGTTAATGATTGCATTTTGACCGTNTTTCTGGCTTGCTGATTTTG
TCCGAGGGATTTACAACATGTTTAATGATTGCATTTTGACCGTAACTGAA
GTTagggaaaaataaaataaaatgtatttttattcCTTGTGTACTtccct
tttttaacttttaataaCGTTGAAATACGCCTACCGCCATCTTGCCTCAA
AAATTATATCCCGGATTAAAGAgaaattttgattgattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017603XLOC_017603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030689-exon-sc0000837-1491911889:78544..79442TCONS_00030689-exon-sc0000837-1491911889:78544..79442Clytia hemisphaericaexon
TCONS_00030689-exon-sc0000837-1510915933:78544..79442TCONS_00030689-exon-sc0000837-1510915933:78544..79442Clytia hemisphaericaexon
TCONS_00030689-exon-sc0000837-1575043694:78544..79442TCONS_00030689-exon-sc0000837-1575043694:78544..79442Clytia hemisphaericaexon
TCONS_00030689-exon-sc0000837-1491911889:82164..82632TCONS_00030689-exon-sc0000837-1491911889:82164..82632Clytia hemisphaericaexon
TCONS_00030689-exon-sc0000837-1510915933:82164..82632TCONS_00030689-exon-sc0000837-1510915933:82164..82632Clytia hemisphaericaexon
TCONS_00030689-exon-sc0000837-1575043694:82164..82632TCONS_00030689-exon-sc0000837-1575043694:82164..82632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000837supercontigsc0000837:78544..82632 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0306106	0.119401	0	0	4.01234	2.13716	2.82578	2.7383	0.850186	2.00576	1.77207	1.06629	0.618775	0.64362	0.0470138	0.194348	0	0.0555743	0	0.204303	0.109942	0	0	0.387554	1.46462	0.800734	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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