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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030826 ID=TCONS_00030826|Name=TCONS_00030826|organism=Clytia hemisphaerica|type=transcript|length=1761bp
ACATAATTAAGGAATGGTGAAGAACTTCTTGTACTATTATTggcttgaaa
aagaaaatattgaatacacgcataacgtttataaataTACTAAGGTTCCG
TTTTGGTAACAAAAATAAGCATAAAGCTAAGCATACCTCCTAgctgaaat
gtaaaaaaaactcGTGCAGCTAAATTCTAAAACGCTGACTTTTTAAGGGT
TAATTTTAAAGCTGTTCTGAGCTGTTTCTGAGACCAAGGATTTCCGCCCG
TGGcgccaaataacaaaaaaaaaatcattctttGAGCAGAATCAATGTtc
tgatttggaaattttcatgaacccaaagaaaatgaacaaaagtctaagca
tataaataagcataaattaaggctgaaaatgagaatttgctaagcatatt
gagCTGCTAACAGATTTtcctgtatgcttataaaacaaaacaagcgtatt
tttatcattttttcacTTCAAACTTCCTTGATTGTTCTGTAAATACCAGC
AGGGCCAAATTTTTCCACAGCTAATTTGAAGTCTTTACCGTCAAAGTAGT
AATCGTCAATTTCAAGAATCTGCATCTCATTCATCATTTCACGAAAATCT
TTGATATTGTGTCTTTGCAGATCCAATGCATCCAAATCAACTGATTTCAC
TGGTAGACTTTTTAATAACGAAAAATCCTTAGGCTTATATTGATAATCAC
TACTATAGTTGCGATACAAGTAAAAGCcagaaaaataagattttttgatt
gGTGGCTCATGCAAAGACTTAATTTTGGATAGAGTTTCAACCATTCTTAC
GACATCTTCACTcccaaatatttcaaattgaaatgaCTTTATATGCCTAA
AAGGCAAATCTGTCAGCAATTCCATGGGTGGTACATTTTCATCATCAAAG
TCCTCAAAATTgaattcaaactttttcaaatatttcatttttctcataaC
ATCAGCAAATTTTAAAAGAGAAGTATGTTCACCTTCTGTTCTTAAAAAGA
AACTCTCAATCTCTATAATTTGAATGTCGTATTCAACCATCAACTCTAAC
TCTTTTATAGTAAGCGAATAATTTCCAAAATCAAGCTTTACTGTGGTGCT
TTTCAGTTTTGCTAGTAGATTGATATAATCCAATATATTATTTTCAGTCA
TGTCAAAACAAGACATTGAAACACTGGGTATATGAAATTTATCCGCAACT
AATTTAAACTGTTGAAATGTCCATATTTCATCTAATGAATTATAATGATC
AATTATAAGTTCTTTTACTGAAATTGTTTCAAGGATTTCTAGGAAATGAT
CAAATCTGTCTCCTTTGAATTTGAAAGCATTTGTATGGACAGCAACAGGG
ACTTTCAAATGGCGCAACTGTGTTTTCAATGGTGCCCTATGTTTATTCCA
AGTATCAATATGTAATAAATTAAGGTCAGGCACCATTCCAACAATTTCAA
CCcatgaacaagaaaaatctttaacattCAACTCGTGAATTGGCAGGTGT
GATATTTTAAGCAGAAAGTCAATGTCCTTTTCTGGATGAGTGAACGTTGG
ATTAGACCAGAGCTTTTCATATGCAATCTGTTTTAATTCCTTTGATGTAA
GAGCAATGTTTTTGGTACTTTCTGTGTCCAGATATGAGATAATCATCTTC
TTTAGTTCAACTGGTATTAAACTAAAATCCATATTCAAATTAGTTTATGC
TTATCaatctaaaagaaaaacaaacttaaaatcttttgtttgttATTCAT
TGCATAATTTT Run BLAST on NCBI protein sequence of TCONS_00030826-protein >TCONS_00030826-protein ID=TCONS_00030826-protein|Name=TCONS_00030826-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MDFSLIPVELKKMIISYLDTESTKNIALTSKELKQIAYEKLWSNPTFTHP
EKDIDFLLKISHLPIHELNVKDFSCSWVEIVGMVPDLNLLHIDTWNKHRA
PLKTQLRHLKVPVAVHTNAFKFKGDRFDHFLEILETISVKELIIDHYNSL
DEIWTFQQFKLVADKFHIPSVSMSCFDMTENNILDYINLLAKLKSTTVKL
DFGNYSLTIKELELMVEYDIQIIEIESFFLRTEGEHTSLLKFADVMRKMK
YLKKFEFNFEDFDDENVPPMELLTDLPFRHIKSFQFEIFGSEDVVRMVET
LSKIKSLHEPPIKKSYFSGFYLYRNYSSDYQYKPKDFSLLKSLPVKSVDL
DALDLQRHNIKDFREMMNEMQILEIDDYYFDGKDFKLAVEKFGPAGIYRT
IKEV Run BLAST on NCBI transcript from alignment at sc0000852:85596..87356 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030826 ID=TCONS_00030826|Name=TCONS_00030826|organism=Clytia hemisphaerica|type=transcript|length=1761bp|location=Sequence derived from alignment at sc0000852:85596..87356 (Clytia hemisphaerica)
AAAATTATGCAATGAATaacaaacaaaagattttaagtttgtttttcttt
tagattGATAAGCATAAACTAATTTGAATATGGATTTTAGTTTAATACCA
GTTGAACTAAAGAAGATGATTATCTCATATCTGGACACAGAAAGTACCAA
AAACATTGCTCTTACATCAAAGGAATTAAAACAGATTGCATATGAAAAGC
TCTGGTCTAATCCAACGTTCACTCATCCAGAAAAGGACATTGACTTTCTG
CTTAAAATATCACACCTGCCAATTCACGAGTTGaatgttaaagatttttc
ttgttcatgGGTTGAAATTGTTGGAATGGTGCCTGACCTTAATTTATTAC
ATATTGATACTTGGAATAAACATAGGGCACCATTGAAAACACAGTTGCGC
CATTTGAAAGTCCCTGTTGCTGTCCATACAAATGCTTTCAAATTCAAAGG
AGACAGATTTGATCATTTCCTAGAAATCCTTGAAACAATTTCAGTAAAAG
AACTTATAATTGATCATTATAATTCATTAGATGAAATATGGACATTTCAA
CAGTTTAAATTAGTTGCGGATAAATTTCATATACCCAGTGTTTCAATGTC
TTGTTTTGACATGACTGAAAATAATATATTGGATTATATCAATCTACTAG
CAAAACTGAAAAGCACCACAGTAAAGCTTGATTTTGGAAATTATTCGCTT
ACTATAAAAGAGTTAGAGTTGATGGTTGAATACGACATTCAAATTATAGA
GATTGAGAGTTTCTTTTTAAGAACAGAAGGTGAACATACTTCTCTTTTAA
AATTTGCTGATGttatgagaaaaatgaaatatttgaaaaagtttgaattc
AATTTTGAGGACTTTGATGATGAAAATGTACCACCCATGGAATTGCTGAC
AGATTTGCCTTTTAGGCATATAAAGtcatttcaatttgaaatatttgggA
GTGAAGATGTCGTAAGAATGGTTGAAACTCTATCCAAAATTAAGTCTTTG
CATGAGCCACcaatcaaaaaatcttatttttctgGCTTTTACTTGTATCG
CAACTATAGTAGTGATTATCAATATAAGCCTAAGGATTTTTCGTTATTAA
AAAGTCTACCAGTGAAATCAGTTGATTTGGATGCATTGGATCTGCAAAGA
CACAATATCAAAGATTTTCGTGAAATGATGAATGAGATGCAGATTCTTGA
AATTGACGATTACTACTTTGACGGTAAAGACTTCAAATTAGCTGTGGAAA
AATTTGGCCCTGCTGGTATTTACAGAACAATCAAGGAAGTTTGAAgtgaa
aaaatgataaaaatacgcttgttttgttttataagcatacaggaAAATCT
GTTAGCAGctcaatatgcttagcaaattctcattttcagccttaatttat
gcttatttatatgcttagacttttgttcattttctttgggttcatgaaaa
tttccaaatcagaACATTGATTCTGCTCaaagaatgattttttttttgtt
atttggcgCCACGGGCGGAAATCCTTGGTCTCAGAAACAGCTCAGAACAG
CTTTAAAATTAACCCTTAAAAAGTCAGCGTTTTAGAATTTAGCTGCACga
gttttttttacatttcagcTAGGAGGTATGCTTAGCTTTATGCTTATTTT
TGTTACCAAAACGGAACCTTAGTAtatttataaacgttatgcgtgtattc
aatattttctttttcaagccAATAATAGTACAAGAAGTTCTTCACCATTC
CTTAATTATGT Coding sequence (CDS) from alignment at sc0000852:85596..87356 >TCONS_00030826 ID=TCONS_00030826|Name=TCONS_00030826|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0000852:85596..87356 (Clytia hemisphaerica)
ATGGATTTTAGTTTAATACCAGTTGAACTAAAGAAGATGATTATCTCATA
TCTGGACACAGAAAGTACCAAAAACATTGCTCTTACATCAAAGGAATTAA
AACAGATTGCATATGAAAAGCTCTGGTCTAATCCAACGTTCACTCATCCA
GAAAAGGACATTGACTTTCTGCTTAAAATATCACACCTGCCAATTCACGA
GTTGaatgttaaagatttttcttgttcatgGGTTGAAATTGTTGGAATGG
TGCCTGACCTTAATTTATTACATATTGATACTTGGAATAAACATAGGGCA
CCATTGAAAACACAGTTGCGCCATTTGAAAGTCCCTGTTGCTGTCCATAC
AAATGCTTTCAAATTCAAAGGAGACAGATTTGATCATTTCCTAGAAATCC
TTGAAACAATTTCAGTAAAAGAACTTATAATTGATCATTATAATTCATTA
GATGAAATATGGACATTTCAACAGTTTAAATTAGTTGCGGATAAATTTCA
TATACCCAGTGTTTCAATGTCTTGTTTTGACATGACTGAAAATAATATAT
TGGATTATATCAATCTACTAGCAAAACTGAAAAGCACCACAGTAAAGCTT
GATTTTGGAAATTATTCGCTTACTATAAAAGAGTTAGAGTTGATGGTTGA
ATACGACATTCAAATTATAGAGATTGAGAGTTTCTTTTTAAGAACAGAAG
GTGAACATACTTCTCTTTTAAAATTTGCTGATGttatgagaaaaatgaaa
tatttgaaaaagtttgaattcAATTTTGAGGACTTTGATGATGAAAATGT
ACCACCCATGGAATTGCTGACAGATTTGCCTTTTAGGCATATAAAGtcat
ttcaatttgaaatatttgggAGTGAAGATGTCGTAAGAATGGTTGAAACT
CTATCCAAAATTAAGTCTTTGCATGAGCCACcaatcaaaaaatcttattt
ttctgGCTTTTACTTGTATCGCAACTATAGTAGTGATTATCAATATAAGC
CTAAGGATTTTTCGTTATTAAAAAGTCTACCAGTGAAATCAGTTGATTTG
GATGCATTGGATCTGCAAAGACACAATATCAAAGATTTTCGTGAAATGAT
GAATGAGATGCAGATTCTTGAAATTGACGATTACTACTTTGACGGTAAAG
ACTTCAAATTAGCTGTGGAAAAATTTGGCCCTGCTGGTATTTACAGAACA
ATCAAGGAAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030826-exon-sc0000852-1491911889:85596..87356 | TCONS_00030826-exon-sc0000852-1491911889:85596..87356 | Clytia hemisphaerica | exon |
| TCONS_00030826-exon-sc0000852-1510915933:85596..87356 | TCONS_00030826-exon-sc0000852-1510915933:85596..87356 | Clytia hemisphaerica | exon |
| TCONS_00030826-exon-sc0000852-1575043694:85596..87356 | TCONS_00030826-exon-sc0000852-1575043694:85596..87356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000852 | supercontig | sc0000852:85596..87356 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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