TCONS_00030836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030836
Unique NameTCONS_00030836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030836 ID=TCONS_00030836|Name=TCONS_00030836|organism=Clytia hemisphaerica|type=transcript|length=538bp
TTTCTCTAATATAAAGAAATGGACTTgtcagaaataaaatattaaatcaC
GATTATCTAAATTTAGTAATAcacaatattattttttaaatcgaATAACC
ACTTTGTGATGGAAACTTAAACATTAGTTGGTGTCATGTTCTAATGTTAA
ATAACAAACTCGATTCAATTTACCTTGCTCTAACTGATCGATCTCTTGTT
TTAACTCTTCgattatctttttttgcttcaTCACTTTCATGTCTCAAACG
ATACAATAAAAACAGAAATCCCATTCAACGCACTGTGTGTCAAAAATTCG
AGGCTTTTTCTTAATATTAGCCTACGTGTTGGGATTTTCTTGCATGACCT
CATGCTCCATTATAGATTACTGTAATGGCAGTTATTATGGATATTCTTTC
CTTATTATAGCAATTATATTTCTCGTTTATATATGAAAGCTAAATACCAC
TTACCAGAGGCCCCGTCCTGGATATTTGAAAGCCAAAAAATAGTTAGCAA
ACTAAAAATGGAGAAGTTGtttcgataaaaatgaaaat
Run BLAST on NCBI

transcript from alignment at sc0000852:177017..177554

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030836 ID=TCONS_00030836|Name=TCONS_00030836|organism=Clytia hemisphaerica|type=transcript|length=538bp|location=Sequence derived from alignment at sc0000852:177017..177554 (Clytia hemisphaerica)
attttcatttttatcgaaaCAACTTCTCCATTTTTAGTTTGCTAACTATT
TTTTGGCTTTCAAATATCCAGGACGGGGCCTCTGGTAAGTGGTATTTAGC
TTTCATATATAAACGAGAAATATAATTGCTATAATAAGGAAAGAATATCC
ATAATAACTGCCATTACAGTAATCTATAATGGAGCATGAGGTCATGCAAG
AAAATCCCAACACGTAGGCTAATATTAAGAAAAAGCCTCGAATTTTTGAC
ACACAGTGCGTTGAATGGGATTTCTGTTTTTATTGTATCGTTTGAGACAT
GAAAGTGAtgaagcaaaaaaagataatcGAAGAGTTAAAACAAGAGATCG
ATCAGTTAGAGCAAGGTAAATTGAATCGAGTTTGTTATTTAACATTAGAA
CATGACACCAACTAATGTTTAAGTTTCCATCACAAAGTGGTTATtcgatt
taaaaaataatattgtgTATTACTAAATTTAGATAATCGtgatttaatat
tttatttctgacAAGTCCATTTCTTTATATTAGAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017707XLOC_017707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030836-exon-sc0000852-1491911889:177017..177554TCONS_00030836-exon-sc0000852-1491911889:177017..177554Clytia hemisphaericaexon
TCONS_00030836-exon-sc0000852-1510915933:177017..177554TCONS_00030836-exon-sc0000852-1510915933:177017..177554Clytia hemisphaericaexon
TCONS_00030836-exon-sc0000852-1575043694:177017..177554TCONS_00030836-exon-sc0000852-1575043694:177017..177554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000852supercontigsc0000852:177017..177554 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.120743	0.660085	0.238541	0	0	0.138639	0	0	0.112558	0.109251	0	0.247241	0.349791	0.0612323	0	0	0	0	0	0.0512942	0	0.306129	0	0.115778	0	0.276182	0	0	0.433074
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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