TCONS_00030838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030838
Unique NameTCONS_00030838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030838 ID=TCONS_00030838|Name=TCONS_00030838|organism=Clytia hemisphaerica|type=transcript|length=622bp
ctttttactaaaaaaataatgaaaagttaaattcttaccatatttatttt
caaattaagaAAATTGACTTATCCTTTGATCAGACTTAGGAATAAATCAG
CAAACAAATGAACAGGATTTTGCTTCGCAAATCTATCAGATCCCGTTCTC
AGGTGAGTTACAGCAAgttccaaacatattttgcttgacgcgcaccgctt
cccattgttccttaactctcgtatatagctcaaaagaagcgtttAAAGTC
AAAAATCCCAGGGACACAAGACAAGGAAACgacctttttaaactttgtaa
CTTATTGGAAACATTTAAgtttaaaataaacaataaagaCTGAAGCAGTA
GATATTTCAGTTTTCTTTTAATCTTACGTCGTAAATCTTTGTCATGTAAA
TTCGATTGTTGGCCCAGTGGCCGTTGCACTTTTCACGTCTTGCTCATCTG
TAAAGAATAAGATAATTAAATATCGTATCAAAAGGATGTCGGAAACATTT
TTCTAcacattcacgcattcatgcaacCGAAGATGCCCATTCACACAAAC
TGCTGAGGGGCCCTCTAAAGTAAACAATAAAGACCGAAGCAGTAGATATT
TCAGTTTTCTTTTAATCTTACG
Run BLAST on NCBI

transcript from alignment at sc0000852:184172..184793

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030838 ID=TCONS_00030838|Name=TCONS_00030838|organism=Clytia hemisphaerica|type=transcript|length=622bp|location=Sequence derived from alignment at sc0000852:184172..184793 (Clytia hemisphaerica)
CGTAAGATTAAAAGAAAACTGAAATATCTACTGCTTCGGTCTTTATTGTT
TACTTTAGAGGGCCCCTCAGCAGTTTGTGTGAATGGGCATCTTCGgttgc
atgaatgcgtgaatgtgTAGAAAAATGTTTCCGACATCCTTTTGATACGA
TATTTAATTATCTTATTCTTTACAGATGAGCAAGACGTGAAAAGTGCAAC
GGCCACTGGGCCAACAATCGAATTTACATGACAAAGATTTACGACGTAAG
ATTAAAAGAAAACTGAAATATCTACTGCTTCAGtctttattgtttatttt
aaacTTAAATGTTTCCAATAAGttacaaagtttaaaaaggtcGTTTCCTT
GTCTTGTGTCCCTGGGATTTTTGACTTTaaacgcttcttttgagctatat
acgagagttaaggaacaatgggaagcggtgcgcgtcaagcaaaatatgtt
tggaacTTGCTGTAACTCACCTGAGAACGGGATCTGATAGATTTGCGAAG
CAAAATCCTGTTCATTTGTTTGCTGATTTATTCCTAAGTCTGATCAAAGG
ATAAGTCAATTTtcttaatttgaaaataaatatggtaagaatttaacttt
tcattatttttttagtaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017709XLOC_017709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030838-exon-sc0000852-1491911889:184172..184793TCONS_00030838-exon-sc0000852-1491911889:184172..184793Clytia hemisphaericaexon
TCONS_00030838-exon-sc0000852-1510915933:184172..184793TCONS_00030838-exon-sc0000852-1510915933:184172..184793Clytia hemisphaericaexon
TCONS_00030838-exon-sc0000852-1575043694:184172..184793TCONS_00030838-exon-sc0000852-1575043694:184172..184793Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000852supercontigsc0000852:184172..184793 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.797364	1.10365	0.709301	0.266644	0	0.274625	0	0.103394	0.144777	0.358659	0	0.0572106	0.114262	0.593312	0.0975566	0.15704	0.0644867	0	0	0.286668	0.249166	0.243069	0.578417	0.379462	0.368919	0	0.235579	0.502832	1.0795	2.07214
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00030838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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