|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030915 ID=TCONS_00030915|Name=TCONS_00030915|organism=Clytia hemisphaerica|type=transcript|length=2017bp
AAAGAACATCATGAAGCCTTCACTAGAAGCTCGGAAAATGATATCGCTGT
TATGTTATCAGGGGAAGACTCTCTCCATTGCGACACGAAGGTTTTCAAAC
AGATCAGAAAAACTGCGACTAAAGTAAACCTTGACTATCGAGAATACAAT
AACTTTTGCCACCTTTGGAACTTGATTTCGAAAGAGTAGGAATTTTACCC
TAACAGTTTCTCGACCAACAAGAGGCTCTTTCAATAGctaactttaaaga
aaaaactcaaaaaNTCTCGACCAACAAGAGGCTCTTTCAATAGctaactt
taaagaaaaaactcaaaaacaaaattacaaCGAATCAAAGATGGGATCCT
CCAAAAAACCGGAGATCACCGaaccaaagaaaagaaaaaccaaaaacaac
gtTTCACCTACGAGAATAAGTAAGTGTACAGGACATCGATATGGAAACAG
TAATCGAAGATCAACATGTCTCACCCTCCGGTGAGGCAAAAATTGACTTC
ACCAAAACAATCGAACAAACCATCCCCCTAGACCGGGAAATTAGAAAAGA
GGAAGGGAAGGGCCTTATCCGCCAGAGACGAGAACGTTCAGATGACCAGG
AGACGACCTCCAAAAGAGGGAAAACAGAATCACCCAAACAAGATGTCCCA
ACCGGGCTGGGGGAGGGTGTAGGCCCGATTGGCCCGAttgtagcaaaaca
aactaacttTAAAACTCATTATCAAAATAAGGGACTTTATTTATAATTGA
GGTCACAAAAGTTATATCCTTTACAGGTATTTAATAACATTGGTAGAATA
GCGGTGATATCAGAGGATATATTTTGAATATATCTTTCGAAACCTCTTTC
GAAACCTCTTTTGAATAACCCGAAACCGCTTTTTGAATCCGAAACCTGGT
TCCTAAACTAAAAATCCGAATTCAAATCCAAAGCGAAATCGCATATggga
aatcaaaacaaacaaaatggcgtcGAAGTTGTTGCAGGACGTCGAGTTCT
GTGTGGCTTCTAAAGTGATGCTGGCATATTATTACGTGATGGATGTTGAT
TACCCCAAACAACTGGAGCTCGCTTACAGCGTGCTCCAATACTTTTTGTT
TGAAGATACCAAGGTGCCAAAAGAAATAACACAAGAATTGGATGACTTCA
TGGACCAATACACCAAGTTTAAAGTCGATCGTAAATCGCAAAATCGTAAA
TCGCAAAAGTGACTTGCTTAGCTTACTTGAGCTTGTTAGAGCGTGCTTAC
TTCTTGTTCGAAGACGGAGGTGCCAAAACGACTTTTTGTTGAACACTTCG
TAGTTTTTAGAGTTATACAGTGTGTCCGGTAAAAAAGCGGAACAAGAGTT
TCGAATATTTACAGTAATTATTTGTTCaaccaatagatattcaattccca
aatTGATTTAATAGGTtttgataaaagaaatcaaGTACTTAAAGGTAGTG
AggatttttcttatttatatgaATTATATTTCGCTTTTTTCCAGACACAC
TGTATTGTACATAGGACGAAAAAAGTTTCGATtgcttttgttgattttta
cagCTGCAGAAACTCATTCAGAAAAACAATTCCTCGGTGAATCCCCCCAT
TAAATTACAATTATATCGTTCTTTCAGTAAATTTAGGAAGTTTACTGGGG
GGGGATTGTCCGGTAAGCTAAATTTggaattttgttaatatttcaaAGCA
AATTTCGTATAGAAAGAGTATACACTCTTCTCAATCTTGATATGCGTATA
AGTATGACTACGCAATGAATTTCATCATATATGGTATAAAGATGGCGTCA
CGGGGTTCAAATCATTACGTTATCAGACTTAATACTCTTTTACATTTGAT
TATACATTATCGTTAGGACTATACTCTTCTTATACTCTTTTACATTTGAT
TATATATCATCGTTAGGAttatattcttgatatgcgtaactTTTTCTAAC
GGAATTTGACTCCTTTTGTGCGACATGACGTCACACGGGGGTGGGGCAAT
CTTCCGTTACATATTAA Run BLAST on NCBI transcript from alignment at sc0000859:125717..127733 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030915 ID=TCONS_00030915|Name=TCONS_00030915|organism=Clytia hemisphaerica|type=transcript|length=2017bp|location=Sequence derived from alignment at sc0000859:125717..127733 (Clytia hemisphaerica)
TTAATATGTAACGGAAGATTGCCCCACCCCCGTGTGACGTCATGTCGCAC
AAAAGGAGTCAAATTCCGTTAGAAAAagttacgcatatcaagaatataaT
CCTAACGATGATATATAATCAAATGTAAAAGAGTATAAGAAGAGTATAGT
CCTAACGATAATGTATAATCAAATGTAAAAGAGTATTAAGTCTGATAACG
TAATGATTTGAACCCCGTGACGCCATCTTTATACCATATATGATGAAATT
CATTGCGTAGTCATACTTATACGCATATCAAGATTGAGAAGAGTGTATAC
TCTTTCTATACGAAATTTGCTttgaaatattaacaaaattccAAATTTAG
CTTACCGGACAATCCCCCCCCAGTAAACTTCCTAAATTTACTGAAAGAAC
GATATAATTGTAATTTAATGGGGGGATTCACCGAGGAATTGTTTTTCTGA
ATGAGTTTCTGCAGctgtaaaaatcaacaaaagcaATCGAAACTTTTTTC
GTCCTATGTACAATACAGTGTGTCTGGAAAAAAGCGAAATATAATtcata
taaataagaaaaatccTCACTACCTTTAAGTACttgatttcttttatcaa
aACCTATTAAATCAatttgggaattgaatatctattggttGAACAAATAA
TTACTGTAAATATTCGAAACTCTTGTTCCGCTTTTTTACCGGACACACTG
TATAACTCTAAAAACTACGAAGTGTTCAACAAAAAGTCGTTTTGGCACCT
CCGTCTTCGAACAAGAAGTAAGCACGCTCTAACAAGCTCAAGTAAGCTAA
GCAAGTCACTTTTGCGATTTACGATTTTGCGATTTACGATCGACTTTAAA
CTTGGTGTATTGGTCCATGAAGTCATCCAATTCTTGTGTTATTTCTTTTG
GCACCTTGGTATCTTCAAACAAAAAGTATTGGAGCACGCTGTAAGCGAGC
TCCAGTTGTTTGGGGTAATCAACATCCATCACGTAATAATATGCCAGCAT
CACTTTAGAAGCCACACAGAACTCGACGTCCTGCAACAACTTCgacgcca
ttttgtttgttttgatttcccATATGCGATTTCGCTTTGGATTTGAATTC
GGATTTTTAGTTTAGGAACCAGGTTTCGGATTCAAAAAGCGGTTTCGGGT
TATTCAAAAGAGGTTTCGAAAGAGGTTTCGAAAGATATATTCAAAATATA
TCCTCTGATATCACCGCTATTCTACCAATGTTATTAAATACCTGTAAAGG
ATATAACTTTTGTGACCTCAATTATAAATAAAGTCCCTTATTTTGATAAT
GAGTTTTAaagttagtttgttttgctacaaTCGGGCCAATCGGGCCTACA
CCCTCCCCCAGCCCGGTTGGGACATCTTGTTTGGGTGATTCTGTTTTCCC
TCTTTTGGAGGTCGTCTCCTGGTCATCTGAACGTTCTCGTCTCTGGCGGA
TAAGGCCCTTCCCTTCCTCTTTTCTAATTTCCCGGTCTAGGGGGATGGTT
TGTTCGATTGTTTTGGTGAAGTCAATTTTTGCCTCACCGGAGGGTGAGAC
ATGTTGATCTTCGATTACTGTTTCCATATCGATGTCCTGTACACTTACTT
ATTCTCGTAGGTGAAacgttgtttttggtttttcttttctttggttCGGT
GATCTCCGGTTTTTTGGAGGATCCCATCTTTGATTCGttgtaattttgtt
tttgagttttttctttaaagttagCTATTGAAAGAGCCTCTTGTTGGTCG
AGANtttttgagttttttctttaaagttagCTATTGAAAGAGCCTCTTGT
TGGTCGAGAAACTGTTAGGGTAAAATTCCTACTCTTTCGAAATCAAGTTC
CAAAGGTGGCAAAAGTTATTGTATTCTCGATAGTCAAGGTTTACTTTAGT
CGCAGTTTTTCTGATCTGTTTGAAAACCTTCGTGTCGCAATGGAGAGAGT
CTTCCCCTGATAACATAACAGCGATATCATTTTCCGAGCTTCTAGTGAAG
GCTTCATGATGTTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030915-exon-sc0000859-1491911889:125717..127733 | TCONS_00030915-exon-sc0000859-1491911889:125717..127733 | Clytia hemisphaerica | exon |
| TCONS_00030915-exon-sc0000859-1510915933:125717..127733 | TCONS_00030915-exon-sc0000859-1510915933:125717..127733 | Clytia hemisphaerica | exon |
| TCONS_00030915-exon-sc0000859-1575043694:125717..127733 | TCONS_00030915-exon-sc0000859-1575043694:125717..127733 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000859 | supercontig | sc0000859:125717..127733 . |
Blast
The following BLAST results are available for this feature:
|
