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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030921 ID=TCONS_00030921|Name=TCONS_00030921|organism=Clytia hemisphaerica|type=transcript|length=2119bpRun BLAST on NCBI transcript from alignment at sc0000860:15314..47811- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00030921 ID=TCONS_00030921|Name=TCONS_00030921|organism=Clytia hemisphaerica|type=transcript|length=32498bp|location=Sequence derived from alignment at sc0000860:15314..47811- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00030921 vs. Swiss-Prot (Human)
Match: KBL (2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial OS=Homo sapiens GN=GCAT PE=1 SV=1) HSP 1 Score: 495.738 bits (1275), Expect = 5.672e-169 Identity = 254/413 (61.50%), Postives = 313/413 (75.79%), Query Frame = 2
Query: 92 QAIMLKLHRRCMSAAATAQMREIVAKQLGAIKEAGTWKVERVITSPQADRITVDGTSGKLLNFCANNYLGLSSHKDVIAAAAKSLNDRGNGLSSVRFICGTQDIHIELERKIAEFHEREDTIAYISCFDANAGIFESLLTPEDAVISDELNHASIIDGIRLCKAKKYRYKHRDMQALEDSLKDAREKGARMIMIVTDGVFSMDGTVAPLKDICDLAEKYSALTFIDECHGTGVIGKTGRGTEELLNQMGRVDIINSXXXXXXXXXXXXXXXXPKELTSLLRQKSRPYLFSNTLPPPVVASADKVFEMLLKGTTLIPKLAENTELFRNRMTQAGFTVSGDNHPICPVMMPDERTAIEFADQLLANGIYVIGFTYPVVPKGRARIRVQLSAVHSTEDINMCCDAFTNVGEKLGVI 1330
+A + + R + +A AQ+R I+ +L I+ AGTWK ERVITS Q I VDG SG +LNFCANNYLGLSSH +VI A ++L + G GLSSVRFICGTQ IH LE KIA FH+RED I Y SC+DANAG+FE+LLTPEDAV+SDELNHASIIDGIRLCKA KYRY+H DM LE L++A++ R+ ++ TDG FSMDG +APL++IC LA +Y AL F+DECH TG +G TGRGT+ELL M +V IINSTLGKALGGA+GGYTTGP L SLLRQ++RPYLFSN+LPP VV A K ++L+ T++ +A T+ FR++M AGFT+SG +HPICPVM+ D R A AD +L GI+VIGF+YPVVPKG+ARIRVQ+SAVHS EDI+ C +AF VG G +
Sbjct: 8 RAALFWVPRGRRAQSALAQLRGILEGELEGIRGAGTWKSERVITSRQGPHIRVDGVSGGILNFCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKNLEAKIARFHQREDAILYPSCYDANAGLFEALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAKLQEAQKH--RLRLVATDGAFSMDGDIAPLQEICCLASRYGALVFMDECHATGFLGPTGRGTDELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSNSLPPAVVGCASKALDLLMGSNTIVQSMAAKTQRFRSKMEAAGFTISGASHPICPVMLGDARLASRMADDMLKRGIFVIGFSYPVVPKGKARIRVQISAVHSEEDIDRCVEAFVEVGRLHGAL 418 The following BLAST results are available for this feature:
BLAST of TCONS_00030921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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