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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030923 ID=TCONS_00030923|Name=TCONS_00030923|organism=Clytia hemisphaerica|type=transcript|length=4312bpRun BLAST on NCBI transcript from alignment at sc0000860:48247..74091- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00030923 ID=TCONS_00030923|Name=TCONS_00030923|organism=Clytia hemisphaerica|type=transcript|length=25845bp|location=Sequence derived from alignment at sc0000860:48247..74091- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00030923 vs. Swiss-Prot (Human)
Match: DNM3B (DNA (cytosine-5)-methyltransferase 3B OS=Homo sapiens GN=DNMT3B PE=1 SV=1) HSP 1 Score: 434.106 bits (1115), Expect = 1.440e-132 Identity = 257/645 (39.84%), Postives = 346/645 (53.64%), Query Frame = 2
Query: 1424 KSIRINDLVIAKLKGFDWWFGKIVSYQRARKSPPAEGSCWIYWYGDHKLSEIPLSSCEHLDQFSVRFLPKKLRG--QYLTSVEEALNEAALRCGKVGVSVHLPRXXXXXXXXXXXXWAMDGFQPHGVDALR--SPIEVVNQLEREVDGSDK-DSNNMDN------AHDNDEINFIPVL-----------------NEEIKLLFDRVAAGKANIEDLCLACGDTKVFASHPLFEGGLCKECKESFLESAFLYDDSGSQMYCCICSEGDHIFMCDNIGCQRSYCPVCIDMLCGVGYXXXXXXXXXXWRCFMC-EEMTVRLLKVRNDWQDRLKEIFNEE------------------RNHI------------------------DFVA-----ETHHARTIRH------VGDVCKITEKQMEEWGPFDLLVGGSPCNDLSIANPLRKGIYDGTGRLFFEYYRILQYAMNSRLDHAHQQPRPFFWLFENVVGMRYDDRDVITRFLQCNPTIISAKDLSPQQRVRYYWGNLPGMNRPLCGITGQSLSLQDCLEPNCGRTAKVEKVRCITTKRTSLKQQTKLVLPVHLEHSVTQQTEDELWITEVERIFGFPEHYTDIGNMGQRQRQKLLGKSWSVPVIQHLLMPLKDYF 3112
K I DLV K+KGF WW +VS++ K G W+ W+GD K SE+ L FS F Y ++ AL +A +R GK S P + +QLK ++EWA GF+P G++ L+ + VVN+ + GS K +S +N A D+ ++ P ++ + + VA K+++ED CL+CG + HPLFEGGLC+ C++ FLE ++YDD G Q YC +C EG + +C N C R +C C+++L G G + + +E W C+MC + +L+ R DW RL+ F + R I +VA E+ T++H V DV IT+K +EEWGPFDL++GGSPCNDLS NP RKG+Y+GTGRLFFE+Y +L Y+ D RPFFW+FENVV M+ D+ I+RFL+CNP +I A +S R RY+WGNLPGMNRP+ L LQDCLE N R AK++KV+ ITTK S+KQ + PV V ED LW TE+ERIFGFP HYTD+ NMG+ RQKLLG+SWSVPVI+HL PLKDYF
Sbjct: 221 KEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMRWVQWFGDGKFSEVSADKLVALGLFSQHFNLATFNKLVSYRKAMYHALEKARVRAGKTFPSS--PGDSLEDQLKPMLEWAHGGFKPTGIEGLKPNNTQPVVNKSKVRRAGSRKLESRKYENKTRRRTADDSATSDYCPAPKRLKTNCYNNGKDRGDEDQSREQMASDVANNKSSLEDGCLSCGRKNPVSFHPLFEGGLCQTCRDRFLELFYMYDDDGYQSYCTVCCEGRELLLCSNTSCCRCFCVECLEVLVGTG-TAAEAKLQEPWSCYMCLPQRCHGVLRRRKDWNVRLQAFFTSDTGLEYEAPKLYPAIPAARRRPIRVLSLFDGIATGYLVLKELGIKVGKYVASEVCEESIAVGTVKHEGNIKYVNDVRNITKKNIEEWGPFDLVIGGSPCNDLSNVNPARKGLYEGTGRLFFEFYHLLNYSRPKEGDD-----RPFFWMFENVVAMKVGDKRDISRFLECNPVMIDAIKVSAAHRARYFWGNLPGMNRPVIASKNDKLELQDCLEYN--RIAKLKKVQTITTKSNSIKQGKNQLFPV-----VMNGKEDVLWCTELERIFGFPVHYTDVSNMGRGARQKLLGRSWSVPVIRHLFAPLKDYF 850 The following BLAST results are available for this feature:
BLAST of TCONS_00030923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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