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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00031013 ID=TCONS_00031013|Name=TCONS_00031013|organism=Clytia hemisphaerica|type=transcript|length=1468bpRun BLAST on NCBI protein sequence of TCONS_00031013-protein >TCONS_00031013-protein ID=TCONS_00031013-protein|Name=TCONS_00031013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp MGKPSVSIWEDIHLSDATAILSFETPQEIKNFIVKKFNIDLIKDGLRGKIRun BLAST on NCBI transcript from alignment at sc0000869:55300..77537+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00031013 ID=TCONS_00031013|Name=TCONS_00031013|organism=Clytia hemisphaerica|type=transcript|length=22238bp|location=Sequence derived from alignment at sc0000869:55300..77537+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000869:55300..77537+ >TCONS_00031013 ID=TCONS_00031013|Name=TCONS_00031013|organism=Clytia hemisphaerica|type=CDS|length=9720bp|location=Sequence derived from alignment at sc0000869:55300..77537+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00031013 vs. Swiss-Prot (Human)
Match: CC189 (Coiled-coil domain-containing protein 189 OS=Homo sapiens GN=CCDC189 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 8.524e-43 Identity = 83/249 (33.33%), Postives = 149/249 (59.84%), Query Frame = 1
Query: 304 VSIWE--DIHLSDATAILSFETPQEIKNFIVKKFNIDLIKDGLRGKIILDLYYYTLVFAKENGFNEEQTSAFFSIVKRTHGKTIETPYGNTEEAFRFFQNMLTCHSVKRPPFYVDLFNIQQTKIITDYVLNTYFKHFKLYKYAFTPKVTMNVSITYQGLKXXXXXXXXXTAEDCDENRDEIPYDESSINEGSEI-SVEPKESEDENPAMRELKRIIRTTLDEQINKLKLNMDQKLKSNEDTVMSKMTGV 1041
+ +W+ D+H + L T E++ + + + + LR I LDL+ + L+F ++ GF+ EQTSA ++++ H I TP GN EE +R+F ++L CH V+RPPF +DLF +Q + DYV+NTYF+HFKLYKY FTP+V +++S+TY GL+P T + + +++ + E+ +V P E E + + L+ I+T +++++ +L+ ++++LK++E+ + SK+T +
Sbjct: 76 ICMWKYLDVH---SMHQLEKTTNAEMREVLAELLELGCPEQSLRDAITLDLFCHALIFCRQQGFSLEQTSAACALLQDLHKACIATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALEDYVVNTYFRHFKLYKYVFTPQVRLDLSLTYMGLQPPKLWPESETE----KEESKEMEEQAVTPQKEELETVAPPEPEPSH--IHVLRAYIKTQVNKELEQLQGLVEERLKASEERLSSKLTAL 315 The following BLAST results are available for this feature:
BLAST of TCONS_00031013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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