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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042285 ID=TCONS_00042285|Name=TCONS_00042285|organism=Clytia hemisphaerica|type=transcript|length=1405bp
GTTTCAGCTTCCCATGACAAGGACCATCCACATCCCTTGTCAGCTGAAAT
CATTGACATGCAGTTCCCAATGGGTGAAGCAAgatATCAAAAGCTCATGC
TTGAGCGGATGCTTGAGATTTCAAAGTGTCAAGAGGAAATCAGAAGTAGG
CTTGTCCTGTTGGAGAGTGGTACTGCTGCTGGTCCATCTCGAGCGGTGTC
AGAGAAGGCAAAGTTATTACCCCGTCATCCTTTCACCAACGTAAATGACT
TTGAAGAATGGGAAAAAGATCTAGACAATGGTCAAGCAAATCAATTATTT
AATGGATCGAACAACCCAGTCAAAATTTAACTTGGCTGCTTCTGTTAAac
gaaacattcgaaaaaagaagCCGTTTGGCAACACAAAGACGTTCAAATGT
CTGATTGGTAAGTTCCATGCTTCATCAATATAGTACGCACGCAGCGAACG
GGGAACGTCATCTAACGTAACGTCGTTTCTAAAGATAATTTGTAAGGTTT
TTAAGGGAATGAGAATAGTGACTACTAATGACTTATTTTTTTGTTACATA
TGCAGGGCAAAAGTTATTCAGGAAGGTCAATTCCAAAGGCGTTGCGAAAG
GCCCAACGCAGCAAGATCTGCGAACTTGCATTGGAAACGTCTTCAAGCAT
GCGAAGCCAGGAGAAGAGGAGAAGATCGACGACGATGAACCGGCGAACGA
CGAACGTGAACGTGAACGTGAACCGGTGAACGAAGAGACTTCCCCAAGTC
TGTCGGGAAGCGGATCTGAAAGTGACGTTGAATCTGGGAAGAGGAAAAGG
CAGCGTGTCATCAGTTCAAGCAGTGACGATGATGATCTTGATCGttatta
aagtctatttcacATTAGCTGTCAGTAAATTTTGAAATgctaataacttt
tgatatactTTGAGCTAGATAGCGATATCCTTTGActaaatgaatatttt
tcaaaagttttttcacagtaatgatgttctaagattCGAAAATCACCTTT
GTAAAAATGGTGATTATATCACAATTCTACCAgcagttgatattttttct
tttccatttttcatcttcattttcacaaatttttcgaaatttattttgtt
gataATATCCCACTCacgattatcttttcaatgcgCGTAAAATCGCTATC
TAGCTCGAagtatatcaaaagttatgagcaTTTCAAAATTTACTGACAGC
TAATATGAAATATACTTTAGGAACAAATTAGGGATTATAACAGACTAATA
TTTACTTCTAAAGTGGGTGATCTCTAATTCAACGTATTCTCTCTAGTATT
CGATAATCATAAGCTCTCGTATTCGACGCTCTATTGTTTGAtattattcg
ataaaaatctCATTCCCTTGAAAGTCCCTCTTCTGTGTCTAATTAAAGTA
ACGGG Run BLAST on NCBI transcript from alignment at sc0003327:10328..12506- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042285 ID=TCONS_00042285|Name=TCONS_00042285|organism=Clytia hemisphaerica|type=transcript|length=2179bp|location=Sequence derived from alignment at sc0003327:10328..12506- (Clytia hemisphaerica)
GTTTCAGCTTCCCATGACAAGGACCATCCACATCCCTTGTCAGCTGAAAT
CATTGACATGCAGTTCCCAATGGGTGAAGCAAGTGAGTAACTTTACATGC
CTTATAGTTTGGCCTTAAACTTGTTATTTTAACTTTTATTTTTCGAGTAG
GGACCATTCAAAAAATTTGTATGCTCAGTAGGATAAGGGTCAACCTGAAA
GTATATAAAATATTCCTGTTGTGATTTAATCCTCTTTGATAATTTTATTT
TCAGGATATCAAAAGCTCATGCTTGAGCGGATGCTTGAGATTTCAAAGTG
TCAAGAGGAAATCAGAAGTAGGCTTGTCCTGTTGGAGAGTGGTACTGCTG
CTGGTCCATCTCGAGCGGTGTCAGAGAAGGCAAAGTTATTACCCCGTCAT
CCTTTCACCAACGTAAATGACTTTGAAGAATGGGAAAAAGATCTAGACAA
TGGTCAAGCAAATCAATTAGTGAGTATTTCCTGATACACTCCTTTATCTA
TTTTTTGTACACTTGCGTGCGTGTATGATCGGTTTCAAATACTTTAGGAT
TAGATTTTCCTTGATAAAAGGCCTAAATCTTTGAGAGACAAAGTTGAAGA
CGCAGACCATGGTTTTCAGTCTGAAAGAATAGCCCAATTTTTGGCAATAA
AAGATTTAATATGTGCACATTTTGTTAAATTATAATCGAACCACACTTTT
TCTGCTAGACCAAAGAGTTTGTCAGAATTGGAGGCAAAGACAAGATGGCA
TTAATGCGTAGTTGCATCGATAGGTAATTTTGCAAAATAGTTTTGAAAAG
TTTTTAACAGAGAGACCGTTCAAAATTTGAACCAAAGTTTAATAAGCTAT
TCGTCCTTTGGTCGAAATCATTATTAAACTTTGGCAGAATAAATGAATCG
AAATTGTTTCAGTGTGATGATCACAATTAAAGTCTTATGTTTGTAGATAT
GGAGACTGCAGCACAAATAGTAAAGATCTTATTTAGTTCTGTTCATGATT
TTTCGACCAGACATTTTGAATAAAATCTCTGATTCATTGTATAAACTAAA
TAATAACACTATCTTTTTTAGTTTAATGGATCGAACAACCCAGTCAAAAT
TTAACTTGGCTGCTTCTGTTAAACGAAACATTCGAAAAAAGAAGCCGTTT
GGCAACACAAAGACGTTCAAATGTCTGATTGGTAAGTTCCATGCTTCATC
AATATAGTACGCACGCAGCGAACGGGGAACGTCATCTAACGTAACGTCGT
TTCTAAAGATAATTTGTAAGGTTTTTAAGGGAATGAGAATAGTGACTACT
AATGACTTATTTTTTTGTTACATATGCAGGGCAAAAGTTATTCAGGAAGG
TCAATTCCAAAGGCGTTGCGAAAGGCCCAACGCAGCAAGATCTGCGAACT
TGCATTGGAAACGTCTTCAAGCATGCGAAGCCAGGAGAAGAGGAGAAGAT
CGACGACGATGAACCGGCGAACGACGAACGTGAACGTGAACGTGAACCGG
TGAACGAAGAGACTTCCCCAAGTCTGTCGGGAAGCGGATCTGAAAGTGAC
GTTGAATCTGGGAAGAGGAAAAGGCAGCGTGTCATCAGTTCAAGCAGTGA
CGATGATGATCTTGATCGTTATTAAAGTCTATTTCACATTAGCTGTCAGT
AAATTTTGAAATGCTAATAACTTTTGATATACTTTGAGCTAGATAGCGAT
ATCCTTTGACTAAATGAATATTTTTCAAAAGTTTTTTCACAGTAATGATG
TTCTAAGATTCGAAAATCACCTTTGTAAAAATGGTGATTATATCACAATT
CTACCAGCAGTTGATATTTTTTCTTTTCCATTTTTCATCTTCATTTTCAC
AAATTTTTCGAAATTTATTTTGTTGATAATATCCCACTCACGATTATCTT
TTCAATGCGCGTAAAATCGCTATCTAGCTCGAAGTATATCAAAAGTTATG
AGCATTTCAAAATTTACTGACAGCTAATATGAAATATACTTTAGGAACAA
ATTAGGGATTATAACAGACTAATATTTACTTCTAAAGTGGGTGATCTCTA
ATTCAACGTATTCTCTCTAGTATTCGATAATCATAAGCTCTCGTATTCGA
CGCTCTATTGTTTGATATTATTCGATAAAAATCTCATTCCCTTGAAAGTC
CCTCTTCTGTGTCTAATTAAAGTAACGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042285-exon-sc0003327-1575043694:12425..12506 | TCONS_00042285-exon-sc0003327-1575043694:12425..12506 | Clytia hemisphaerica | exon |
| TCONS_00042285-exon-sc0003327-1575043694:12038..12252 | TCONS_00042285-exon-sc0003327-1575043694:12038..12252 | Clytia hemisphaerica | exon |
| TCONS_00042285-exon-sc0003327-1575043694:10328..11435 | TCONS_00042285-exon-sc0003327-1575043694:10328..11435 | Clytia hemisphaerica | exon |
| TCONS_00042285-exon-sc0003327-1510915933:12425..12506 | TCONS_00042285-exon-sc0003327-1510915933:12425..12506 | Clytia hemisphaerica | exon |
| TCONS_00042285-exon-sc0003327-1510915933:12038..12252 | TCONS_00042285-exon-sc0003327-1510915933:12038..12252 | Clytia hemisphaerica | exon |
| TCONS_00042285-exon-sc0003327-1510915933:10328..11435 | TCONS_00042285-exon-sc0003327-1510915933:10328..11435 | Clytia hemisphaerica | exon |
| TCONS_00042285-exon-sc0003327-1491911889:12425..12506 | TCONS_00042285-exon-sc0003327-1491911889:12425..12506 | Clytia hemisphaerica | exon |
| TCONS_00042285-exon-sc0003327-1491911889:12038..12252 | TCONS_00042285-exon-sc0003327-1491911889:12038..12252 | Clytia hemisphaerica | exon |
| TCONS_00042285-exon-sc0003327-1491911889:10328..11435 | TCONS_00042285-exon-sc0003327-1491911889:10328..11435 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003327 | supercontig | sc0003327:10328..12506 - |
Blast
The following BLAST results are available for this feature:
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