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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042287 ID=TCONS_00042287|Name=TCONS_00042287|organism=Clytia hemisphaerica|type=transcript|length=1183bp
attttttagaacttattttggcgaatcaacaattttttttaattttgaat
accCATGGCAGAATTAGATTTTCtattaaaatttctttctcttcctttaa
tgtattttcttttatttactaGCTGTATTGATGGATCCTAAGAAGATTGC
AAATCACCCCCAACCCAACGTATAAAGAATAAGAAGAGTAAAATCACTTG
CTTATAAAGTTGCCGCAGTTGATGTTCAATGCTGGCACAAACGCTGAATA
AAAACTTTCGAAAGTCCCTAATCTGGAAAAATGCATTGGGAGGAAGAAAA
CTACGAAAGAAGACAACGTATACGTCCACTCATCTTAACGTCTTAAATAA
ATTATTGTTATACCTTGGTGTTGGTTTTTTTGGTTTTCTCAGTCTTCTCC
CACTCGATCAACTCTTTCTTCGTtgctaaaacaaaataaagaagtTTTAG
CCGTATGaccttttcaacttttctcgttTCGAAAATATTTGCAATTTAAT
TTTGtaagtttatgcttgcgaaaaagtcgaaaatttttattttgcctTGC
AGAAGTGTGTACTCCTAAATTAGTTGATCTTTTATAATAACAGTGAGAGA
AAGGTCCCATTCCGAAGAATTAAAAAATCAGTAAAACATTGCGTCATTAT
TTAGATGATCTGTAAAGTGGAGAAGAGGCTTTCTGGGGGAAATTGTGTGC
ACTTCGGAATAGGACCCTCTCATAATAAGAATTCTAATGTACCGTATTAC
TGCAAGACGAACGAACTACTTTCTGCGttcaaactttcgcgaattttgat
gaaaatttgagaattttctcATGAAAAAGTGGCTTAGGGGGACAAACTCC
TTGGTTCAGCTTGAAACATTTATTCTTTGttctagcaggctaaaaagttc
CATGAAAGTTTAAAGTTCAAAAAAGTTTTCGCGCATAATGGCCTTTCCTG
AAAATCATTATCTCTTACGCAAATCGCGTAAAATatgcatattttgaaaa
atgttgtgaaagtttgtacgcctgaaGTATTTGAAGCCTATTAAGTAcac
gaaaaatgttttcttacCGGCCATTTTCAGCACTTCACCACGAACTTTCT
CATCTCCGTCCATAAAGTGTCCAACTTTTCCAACTTCCTCCCAAGTCACC
TTCTTTAAAGGTACAATGACGGTAGAATTATCA Run BLAST on NCBI transcript from alignment at sc0003329:6060..9008- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042287 ID=TCONS_00042287|Name=TCONS_00042287|organism=Clytia hemisphaerica|type=transcript|length=2949bp|location=Sequence derived from alignment at sc0003329:6060..9008- (Clytia hemisphaerica)
ATTTTTTAGAACTTATTTTGGCGAATCAACAATTTTTTTTAATTTTGAAT
ACCCATGGCAGAATTAGATTTTCTATTAAAATTTCTTTCTCTTCCTTTAA
TGTATTTTCTTTTATTTACTAGCTGTATTGATGGATCCTAAGAAGATTGC
AAATCACCCCCAACCCAACGTATAAAGAATAAGAAGAGTAAAATCACTTG
CTTATAAAGGTAAATAATTTTAAGCTTGTCTGATCATGAAACTGTTTTAA
TTTTATTTGAAATTGACATTGATTTGTGTCAAACGTAAAATTTGCAGTAT
TTTTTTAGCTGTAGCCCTCTTTGAATCAAAGAAAAGTGGTTCTAATTAAA
ATCAAGAAAATTCTTTTACCGCTCTCTTTTCAATTTTCTACCTACCAGAT
GATTATTGACATTATTATACAGAAGAATTTTGAATACCAGGGTGTTTTTT
TGACAAAATTTAAAATAGTACTTGTGTTATTTTTTAGTTGCCGCAGTTGA
TGTTCAATGCTGGCACAAACGCTGAATAAAAACTTTCGAAAGTCCCTAAT
CTGGAAAAAGTAAGTTGTCTGTTTTTACCTCTGCAGGGCCACTATTGTCC
ACTTCACAGTCTTTTGACCTTGCTGCTTTTGCTTTGGCAACCTTGGTTAA
TCTTTTCTTTGTTTTTTTGATGATCGGTTTCGCAACAGTTGGTTTAGTAC
TTGCTGTTGATTTGGTCTTTGGTTTGACTGGTGTCTTTGCTACCTCAGCA
TAGGTTGTTTTGGCTGATGCCTGAAAGTAAAGGTTTGATAAAATACTTCA
GCATGTCTAAAAAAACCCATTCATTCTATGTCAGAAAGTTATCGACCATT
AGAAAGGTAATTATAAGAAGAATACTTTTATGATTTTTTAAAAAAGATGA
AGTTTTTTCTACTACTTCGAAAATCATGCCATGAGACAAGGGGCATACAT
TTGCTTATAAAAAAACATGTATTTCAAATATACTTAAAATGAAACAGGAG
TCCTAATAAGGTCAGGGGTTGGAACTTTTTTGAAAAATTAACAAGCAGGG
GGCTGTTTATTTGCAGCAACTTAAGAGTAAGTCCATATGATCACGAAAAA
GAGTGAACTTTTTTACTAATTTGTTGGTCTCATGTGACGTTTTCACTTTT
GCTGGGGCTTGAAAATGAAAGTTGTAATTAGAAGCTCAGATATGGCTCAA
ATGAAAACTTTTTATCCAAAGATTCCAGAGAGTATCACAAACATCTACTT
GAAAATCAATATTTATATTCATAGCTTCTCAAATATTGCTTTTCAGATAT
ATGTTGTGATATTTTTTGGAATTCTTGGATAAATGCCTTTCATTTGAGCC
ATATCTGAGCTTCTGATTTTAACTTGAATTTTCAAACGCCAGCAAAAGTG
AAAACGTCACATGGGACCAACAAATTAGTAAAAAAGTATCATCACTCGTT
TTTGTAATCTTATGGACCTTAATTATGTCTCAAAATAATTTGCAGCTGAG
GCAAAAATGATAACTTTTGATAGAATTCGAATTGAGTTGCGAGTTCGTGC
TCGTTGAAAAAATAAAAATGAAAGGAGTAAAAAATCAACTTTTTGTAGAA
ATGGGGTATAATCACCATTTTCACAGGGGTGATTCTTCAATCTTAGATCA
TAACTCCTGTGAAAATGGTAATTATACCCCATTTCTACAAGAAGTTTTTT
CATTTTCATTTTTCCTTTTTTTCCGTATTTTTTTGCTTGATAATATTCCA
CTCTAAAATATCTTTTCAACGAGCACAAGATCGCAACTTGATTTGAATTA
TATCAAAAGTTAAAGCCATTTTTGACTCAGCTGCAAATTATTTTGAGACA
GACTTTAATTGACCATTTAAAAATTCTAATTCTAAAACAAGTCTGTACAC
GAAGAATTTTTTCAGAACATAGTTGGCTATAGATCACTAAACTTCAAAGT
GCTGTAACTTTTTAAGAGAGGTAAGGTGTTCAGTAAAGTTCAAATGTCTC
GCATTAAGACTCGGCATAATTAATGTATTCTACCCTTCTTGTTTTAGTGC
ATTGGGAGGAAGAAAACTACGAAAGAAGACAACGTATACGTCCACTCATC
TTAACGTCTTAAATAAATTATTGTTATACCTTGGTGTTGGTTTTTTTGGT
TTTCTCAGTCTTCTCCCACTCGATCAACTCTTTCTTCGTTGCTAAAACAA
AATAAAGAAGTTTTAGCCGTATGACCTTTTCAACTTTTCTCGTTTCGAAA
ATATTTGCAATTTAATTTTGTAAGTTTATGCTTGCGAAAAAGTCGAAAAT
TTTTATTTTGCCTTGCAGAAGTGTGTACTCCTAAATTAGTTGATCTTTTA
TAATAACAGTGAGAGAAAGGTCCCATTCCGAAGAATTAAAAAATCAGTAA
AACATTGCGTCATTATTTAGATGATCTGTAAAGTGGAGAAGAGGCTTTCT
GGGGGAAATTGTGTGCACTTCGGAATAGGACCCTCTCATAATAAGAATTC
TAATGTACCGTATTACTGCAAGACGAACGAACTACTTTCTGCGTTCAAAC
TTTCGCGAATTTTGATGAAAATTTGAGAATTTTCTCATGAAAAAGTGGCT
TAGGGGGACAAACTCCTTGGTTCAGCTTGAAACATTTATTCTTTGTTCTA
GCAGGCTAAAAAGTTCCATGAAAGTTTAAAGTTCAAAAAAGTTTTCGCGC
ATAATGGCCTTTCCTGAAAATCATTATCTCTTACGCAAATCGCGTAAAAT
ATGCATATTTTGAAAAATGTTGTGAAAGTTTGTACGCCTGAAGTATTTGA
AGCCTATTAAGTACACGAAAAATGTTTTCTTACCGGCCATTTTCAGCACT
TCACCACGAACTTTCTCATCTCCGTCCATAAAGTGTCCAACTTTTCCAAC
TTCCTCCCAAGTCACCTTCTTTAAAGGTACAATGACGGTAGAATTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042287-exon-sc0003329-1575043694:8800..9008 | TCONS_00042287-exon-sc0003329-1575043694:8800..9008 | Clytia hemisphaerica | exon |
| TCONS_00042287-exon-sc0003329-1575043694:8450..8521 | TCONS_00042287-exon-sc0003329-1575043694:8450..8521 | Clytia hemisphaerica | exon |
| TCONS_00042287-exon-sc0003329-1575043694:6060..6961 | TCONS_00042287-exon-sc0003329-1575043694:6060..6961 | Clytia hemisphaerica | exon |
| TCONS_00042287-exon-sc0003329-1510915933:8800..9008 | TCONS_00042287-exon-sc0003329-1510915933:8800..9008 | Clytia hemisphaerica | exon |
| TCONS_00042287-exon-sc0003329-1510915933:8450..8521 | TCONS_00042287-exon-sc0003329-1510915933:8450..8521 | Clytia hemisphaerica | exon |
| TCONS_00042287-exon-sc0003329-1510915933:6060..6961 | TCONS_00042287-exon-sc0003329-1510915933:6060..6961 | Clytia hemisphaerica | exon |
| TCONS_00042287-exon-sc0003329-1491911889:8800..9008 | TCONS_00042287-exon-sc0003329-1491911889:8800..9008 | Clytia hemisphaerica | exon |
| TCONS_00042287-exon-sc0003329-1491911889:8450..8521 | TCONS_00042287-exon-sc0003329-1491911889:8450..8521 | Clytia hemisphaerica | exon |
| TCONS_00042287-exon-sc0003329-1491911889:6060..6961 | TCONS_00042287-exon-sc0003329-1491911889:6060..6961 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003329 | supercontig | sc0003329:6060..9008 - |
Blast
The following BLAST results are available for this feature:
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