TCONS_00042380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042380
Unique NameTCONS_00042380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042380 ID=TCONS_00042380|Name=TCONS_00042380|organism=Clytia hemisphaerica|type=transcript|length=820bp
attacaatttttttcaaaagatattctCTATAATTCTTATAAAACTGTCT
CTAAACAAAAATATCGTTATTTTTCCTAAGATTTTCAAAGAATAGCTTAT
AAGCCTTATATAATATGTAATATGTACACTATTTTACAACACATATAATA
AAATCCAATATctccaagaaaaaaaaacaagaaaaaatctcaaacaaaaa
tttacaaaaataaacaaaaatattaacaaaaacaataataCCTATTATGT
AAACAACCTATTTATccttaaaacaaaaattatttttttccttcaaaaac
tcaTTAAATTTGGCTGATAGGGTCTTTAAGAATAGAAAAATGACTCTACC
TAAATACAGTTTCCTGTCTAATCACCTAATGGCCTTCGTTAATTACAGTT
GGAAAAACCATCAATATTCTGTCAAATAGCTTGTTTCCGTTAACTTTGAA
TATATGTACTAAGACGGATTACCTAAGGTATGAAAAAGCATTTTTCTCAT
TTCAAAACCCACTCTTTCGATTGAATAGAATAATTTCTACAAATGTGTTT
GATAAAAGTTGCTTTAGAAATATGATGACATTTTATTGACATTGTCCTTT
CACCTTTCCTACGAGTTAGTGTTTCCTCTGTACGTGAATCAATTCAGTTG
AGTTTTATCGTTTAGTCAAATACATAAATTATCATATAGTATGTTTATCA
ACAAAATATATAcagaaaacatcaaaaaaggGTCCctatcaaacataaac
aaaataaaaacgtaATTGATGTTTAAGTGAAAATATCAATCTTTGGGTCA
TGTTGTTGACAAAATGCATT
Run BLAST on NCBI

transcript from alignment at sc0003382:7173..7992

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042380 ID=TCONS_00042380|Name=TCONS_00042380|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at sc0003382:7173..7992 (Clytia hemisphaerica)
AATGCATTTTGTCAACAACATGACCCAAAGATTGATATTTTCACTTAAAC
ATCAATtacgtttttattttgtttatgtttgatagGGACccttttttgat
gttttctgTATATATTTTGTTGATAAACATACTATATGATAATTTATGTA
TTTGACTAAACGATAAAACTCAACTGAATTGATTCACGTACAGAGGAAAC
ACTAACTCGTAGGAAAGGTGAAAGGACAATGTCAATAAAATGTCATCATA
TTTCTAAAGCAACTTTTATCAAACACATTTGTAGAAATTATTCTATTCAA
TCGAAAGAGTGGGTTTTGAAATGAGAAAAATGCTTTTTCATACCTTAGGT
AATCCGTCTTAGTACATATATTCAAAGTTAACGGAAACAAGCTATTTGAC
AGAATATTGATGGTTTTTCCAACTGTAATTAACGAAGGCCATTAGGTGAT
TAGACAGGAAACTGTATTTAGGTAGAGTCATTTTTCTATTCTTAAAGACC
CTATCAGCCAAATTTAAtgagtttttgaaggaaaaaaataatttttgttt
taaggATAAATAGGTTGTTTACATAATAGGtattattgtttttgttaata
tttttgtttatttttgtaaatttttgtttgagattttttcttgttttttt
ttcttggagATATTGGATTTTATTATATGTGTTGTAAAATAGTGTACATA
TTACATATTATATAAGGCTTATAAGCTATTCTTTGAAAATCTTAGGAAAA
ATAACGATATTTTTGTTTAGAGACAGTTTTATAAGAATTATAGagaatat
cttttgaaaaaaattgtaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026224XLOC_026224Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042380-exon-sc0003382-1491911889:7173..7992TCONS_00042380-exon-sc0003382-1491911889:7173..7992Clytia hemisphaericaexon
TCONS_00042380-exon-sc0003382-1510915933:7173..7992TCONS_00042380-exon-sc0003382-1510915933:7173..7992Clytia hemisphaericaexon
TCONS_00042380-exon-sc0003382-1575043694:7173..7992TCONS_00042380-exon-sc0003382-1575043694:7173..7992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003382supercontigsc0003382:7173..7992 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0643205	1.17456	1.29941	5.82284	8.10702	7.77992	9.68478	7.47111	10.2732	5.74205	4.5318	5.07757	3.16931	3.70508	5.22727	10.1845	9.55934	11.0597	9.94018	5.12637	7.2633	2.49367	8.67963	53.7426	48.1787	33.835	18.3197
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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