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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042397 ID=TCONS_00042397|Name=TCONS_00042397|organism=Clytia hemisphaerica|type=transcript|length=644bp
ATTTGGTATCCATAAGCAATTCACGAAAAAAAATGGAGAGGGATGTAAAC
AAACTGAAAAATGTTAACATCAAAGGAAGAACTGGACTTGAAACCACAGT
TGAAGTTGTAGACGAACGTAAATttgaagaaatcaaaatcacACAAGGTA
ACTTTACAAAGATCTTACCACCTCAACTAGAAAAGCTTGGCAAATCGTTG
CTGTACAGTAGATGGAGTGAAGTGTCCAAAGCAGCATTCGACACACCGGT
ATTGCAAATTTCCCTGAAAGAGAACTTTTGTAAAATCCTACAGAAAGAAA
GTGAAGGGTTGTGCAACAAGAAAGACCCATCCATCCttagaaaaacttca
aaagatgaCATTAAATCCTTTAATCTAGTTAAGTTATACGAGGAATTATC
AGTGCGTGCAccatttttggtaaaagttttgAGTTTGATTTGCTTCAATG
GATACCAAGCTAGACGTGATCAGGATTTGCATATACCTGCAGTTTGTGTA
GCAGCTGCAACACTATTAAAGAACAGGAATCAACAAATGAATGCAATGCA
AGTAATGATGAATAGTATTGTCCAACATTCCAGTTTAACAgGTTGTGTTA
AccgtttgaaatttttgaaacttacAACGTCATTAAAGACATAC Run BLAST on NCBI protein sequence of TCONS_00042397-protein >TCONS_00042397-protein ID=TCONS_00042397-protein|Name=TCONS_00042397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
LVSISNSRKKMERDVNKLKNVNIKGRTGLETTVEVVDERKFEEIKITQGN
FTKILPPQLEKLGKSLLYSRWSEVSKAAFDTPVLQISLKENFCKILQKES
EGLCNKKDPSILRKTSKDDIKSFNLVKLYEELSVRAPFLVKVLSLICFNG
YQARRDQDLHIPAVCVAAATLLKNRNQQMNAMQVMMNSIVQHSSLTGCVN
RLKFLKLTTSLKTY Run BLAST on NCBI transcript from alignment at sc0003395:1108..1935- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042397 ID=TCONS_00042397|Name=TCONS_00042397|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at sc0003395:1108..1935- (Clytia hemisphaerica)
ATTTGGTATCCATAAGCAATTCACGAAAAAAAATGGAGAGGGATGTAAAC
AAACTGAAAAATGTTAACATCAAAGGAAGAACTGGACTTGAAACCACAGT
TGAAGTTGTAGACGAACGTAAATTTGAAGAAATCAAAATCACACAAGGTA
ACTTTACAAAGATCTTACCACCTCAACTAGAAAAGCTTGGCAAATCGTTG
CTGTACAGTAGATGGAGTGAAGTGTCCAAAGCAGCATTCGACACACCGGT
ATTGCAAATTTCCCTGAAAGAGAACTTTTGTAAAATCCTACAGAAAGAAA
GTGAAGGGTTGTGCAACAAGAAAGACCCATCCATCCTTAGAAAAACTTCA
AAAGATGACATTAAATCCTTTAATCTAGTTAAGTTATACGAGGAATTATC
AGTGCGTGCACCATTTTTGGTAAAAGTTTTGAGTTTGATTTGCTTCAATG
GATACCAAGCTAGACGTGATCAGGATTTGCATATACCTGCAGTTTGTGTA
GCAGCTGCAACACTATTAAAGAACAGGAATCAACAAATGAATGCAATGCA
AGTAATGATGAATAGTATTGTCCAACATTCCAGTTTAACAGTAAGTTACT
GATTTTCCCATATAATGATATACATACTCTTTGTCTCCATGATATGTATT
TTCAAAATTCACAAAATGAAATTTGGCAGTTTATAAGTATTCAAAAAATT
AAACATCATTTTAGCCTCTACACAGTAATTCACAAGTTACTTTTCAAGTA
ATCATTTTCAAACATTTTCTTTAGGGTTGTGTTAACCGTTTGAAATTTTT
GAAACTTACAACGTCATTAAAGACATAC Coding sequence (CDS) from alignment at sc0003395:1108..1935- >TCONS_00042397 ID=TCONS_00042397|Name=TCONS_00042397|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0003395:1108..1935- (Clytia hemisphaerica)
GGTTGTGTTAACCGTTTGAAATTTTTGAAACTTACAACGTCATTAAAGAC
ATACTTGGTATCCATAAGCAATTCACGAAAAAAAATGGAGAGGGATGTAA
ACAAACTGAAAAATGTTAACATCAAAGGAAGAACTGGACTTGAAACCACA
GTTGAAGTTGTAGACGAACGTAAATTTGAAGAAATCAAAATCACACAAGG
TAACTTTACAAAGATCTTACCACCTCAACTAGAAAAGCTTGGCAAATCGT
TGCTGTACAGTAGATGGAGTGAAGTGTCCAAAGCAGCATTCGACACACCG
GTATTGCAAATTTCCCTGAAAGAGAACTTTTGTAAAATCCTACAGAAAGA
AAGTGAAGGGTTGTGCAACAAGAAAGACCCATCCATCCTTAGAAAAACTT
CAAAAGATGACATTAAATCCTTTAATCTAGTTAAGTTATACGAGGAATTA
TCAGTGCGTGCACCATTTTTGGTAAAAGTTTTGAGTTTGATTTGCTTCAA
TGGATACCAAGCTAGACGTGATCAGGATTTGCATATACCTGCAGTTTGTG
TAGCAGCTGCAACACTATTAAAGAACAGGAATCAACAAATGAATGCAATG
CAAGTAATGATGAATAGTATTGTCCAACATTCCAGTTTAACAGGTTGTGT
TAACCGTTTGAAATTTTTGAAACTTACAACGTCATTAAAGACATACTTGG
TATCCATAAGCAATTCACGAAAAAAAATGGAGAGGGATGTAAACAAACTG
AAAAATGTTAACATCAAAGGAAGAACTGGACTTGAAACCACAGTTGAAGT
TGTAGACGAACGTAAATTTGAAGAAATCAAAATCACACAAGGTAACTTTA
CAAAGATCTTACCACCTCAACTAGAAAAGCTTGGCAAATCGTTGCTGTAC
AGTAGATGGAGTGAAGTGTCCAAAGCAGCATTCGACACACCGGTATTGCA
AATTTCCCTGAAAGAGAACTTTTGTAAAATCCTACAGAAAGAAAGTGAAG
GGTTGTGCAACAAGAAAGACCCATCCATCCTTAGAAAAACTTCAAAAGAT
GACATTAAATCCTTTAATCTAGTTAAGTTATACGAGGAATTATCAGTGCG
TGCACCATTTTTGGTAAAAGTTTTGAGTTTGATTTGCTTCAATGGATACC
AAGCTAGACGTGATCAGGATTTGCATATACCTGCAGTTTGTGTAGCAGCT
GCAACACTATTAAAGAACAGGAATCAACAAATGAATGCAATGCAAGTAAT
GATGAATAGTATTGTCCAACATTCCAGTTTAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042397-exon-sc0003395-1575043694:1346..1935 | TCONS_00042397-exon-sc0003395-1575043694:1346..1935 | Clytia hemisphaerica | exon |
| TCONS_00042397-exon-sc0003395-1575043694:1108..1161 | TCONS_00042397-exon-sc0003395-1575043694:1108..1161 | Clytia hemisphaerica | exon |
| TCONS_00042397-exon-sc0003395-1510915933:1346..1935 | TCONS_00042397-exon-sc0003395-1510915933:1346..1935 | Clytia hemisphaerica | exon |
| TCONS_00042397-exon-sc0003395-1510915933:1108..1161 | TCONS_00042397-exon-sc0003395-1510915933:1108..1161 | Clytia hemisphaerica | exon |
| TCONS_00042397-exon-sc0003395-1491911889:1346..1935 | TCONS_00042397-exon-sc0003395-1491911889:1346..1935 | Clytia hemisphaerica | exon |
| TCONS_00042397-exon-sc0003395-1491911889:1108..1161 | TCONS_00042397-exon-sc0003395-1491911889:1108..1161 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003395 | supercontig | sc0003395:1108..1935 - |
Blast
The following BLAST results are available for this feature:
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