TCONS_00042454 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042454
Unique NameTCONS_00042454
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042454 ID=TCONS_00042454|Name=TCONS_00042454|organism=Clytia hemisphaerica|type=transcript|length=2594bp
CCTCACAAATATTTAGAGTGTAGAGTCTTGAGAAGCACTAGTGAAAGGTG
AAAACAACAGCTTTTTAATTGGATATTCTTTTTCCGGGAAATCTGTTAGA
GACAAAACTAGAGTGAAAAAGTGGTATGCGCCGAGTTTAAAAGTATTGGC
CATGGGGCACATCATAATACTGCAAAAGAGTCCTTGTCACAAATACCGAA
CAGAACAGTCATCGCTGCAGGATGTAGagtaattttaacaaaaaatcaaG
GGTGTATGACTAGGCTTGGTTTGAACAATGGTGCAATAGGAACTGTCGTT
AGTATTATTTATAAACCTAACGTTAGACCACCCCAGATGCCAGAGTTTGT
TATTGTTGACTTTCCAAGATACAAAGGCCCCGTCTGGGACGAACTGCACC
CCACTTGGGTTCCAATAACGGCAAATGTTGTCACTTGTGAGGATGTCAGA
AAATGTTGTAGACGTACTGGTTTTCCATTGATCACAGGTTATGCTATCAC
TATAGCTAAATCGCAAGGTATGACCATTGGACCAAATCAACAAGTCACAA
ATGTCATTATTAAGTTATCACCCGAAACTAGGATGGAACAGACAAACTGT
GGAACATCATACACTGCTTTCTCGCGTGTCACACAAGATAAAGATTGGTG
TTTAGCAGAACCCGTTCCTTTTGAACGTTTGGAATACATCAATAGAAACC
CACAACTTAAACTGAGAAAGGAAGAGGAAAAAAGACTACAGAAGCTCTCC
GCAAAGACAATTGCTGACAATTCGTGTTCAATTGAACAATACCTAGAGAT
GTTACGTGAAGTTGATTTATTCTGTGATGATGGTATATCAGATTCCAACT
GCATGGACCCTTGTTGCTCTAGATGTTTGATTCATAAGAATCAGCTATAA
ATAATAGAAAATACTAGTTACGAACAGTAGTATAAACAGTTGCCAGAGAA
AAGTGATGtgaatataataaaaatatgtaGATTGTACAATAGTGTTGCAA
TAAGGAAATGGTGTCACTTGTATAAGTTGTTATTGGAGTTGGGCATTATG
TTTAATGCATGTCTGGAAGGGTGGTAGGGAGGCCCAGACACAATGAGTGT
ATGTTCCACTCACATTTCATGAAATGATTCCATCTGATATGTTAAGCAGA
TGTATATATACCacacttttgaaaatgttgatgttATGTGTGGAAGTAAC
ATTCAGGCAATCTGATAAGTTGTAGTCATATTGCTGAAGAATGTTAAAAT
TATTGAGTGTATGTTCCACTCACATTTCATGAAATGATTCCATCTGATAT
GTTAAGCAGATGTATATATACCACACTTTTGAAtattgatgttatgtgtg
gAAGTAACATTCAGGCAATCTTATACATAtatcattattgtattatttaa
agttaatttattttatttttcagcaaaaaatactaaaatgaaAGTGGAAA
AAAGATTTAACCGATTTTATTGTGAAAAAAGCCCCAAAGCTGCTTGTTCA
ACGGGTTGTTCAACCAATCAGACGACAGACTTCGTCGTGAATAAAGAGCA
GCAGGTTAGAGAGGAAATGGAGGCGCGCATGAATGAAATGAAAGAGAAAC
ACGAGAGAGAAATGAACGAGTTAAGGGCAAGTATCAAAGAACACCAAGAG
GAAAATGAGGATCAAAACCAAGACGAAGACGACATGCTTTTAGAGGAAGG
AAACGAACTGGAAAACTCGCCAGCAACAGAAgaACTGACACGTGAAGCCT
TCGATTTGTACAGGGTCACTCACCCAGGGCCTGCATCCAATAATGCATAT
CAAAAATGGAAGAGTCTCGGTGGAGAAGATGCCCCGTGGTTTGTTTGGCA
TGTGCGGAAGCGGGGCAGGGGTAGAGCGTGAGGACGGTGAGGTAGAGGGG
GTAGAGCGAGAGGACGGGGAGGCAGAGGGGTAAGCGTTTTGAGTAGGATA
GGAAGGAGTGATCGGGGTAGAGGGAATGTGGGTAGAGCTGACAGGGGTGG
TAGTATTGGTAAGAAGGTATGGGATAGGGACTTTGGTGGGAGggttgttt
tcaattttcaggttgAGAAGGGTTGTGTTGGTATTAATCATCTATGATAG
CTGATTGGTAGTATGTACAAATCAATTCACCAAGACTGCTCATTGCATGC
ATAACACAACCAGGGCGAAATCAtacgattttaagaaaaataaaaaaaaa
tcttagtaTATAACTTTCATCTGATTAGATGATTAATATACAACATCCCA
TTTATCAACCTGAAATTATATATTGTGTTATATCGTTCACTTTCTTCCCT
GGGCGTAGTTGTAGTGTTTAGACTTTCATAGATAGATGTAAGTTCTACAG
AATAGTACCAACGATCCATACATTTTACAATAAGGTAGGCAAATTCCATA
TGTACTGCTGTAAAACATTATCTTTACCACTATTATTCCAAAGACCCCTG
TTTCACAAACCGGTTGGGAAACCCACCCCACTGAAAAATCTAGCCAAAAT
GTTGTTCACAATGGGAAAAATACCATACAGTTTCAGCTCCACTGGGAAAG
TTTTATTATTTCATCCCCATTGGAAAAACCTTCGACTTCCActg
Run BLAST on NCBI

protein sequence of TCONS_00042454-protein

>TCONS_00042454-protein ID=TCONS_00042454-protein|Name=TCONS_00042454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MTRLGLNNGAIGTVVSIIYKPNVRPPQMPEFVIVDFPRYKGPVWDELHPT
WVPITANVVTCEDVRKCCRRTGFPLITGYAITIAKSQGMTIGPNQQVTNV
IIKLSPETRMEQTNCGTSYTAFSRVTQDKDWCLAEPVPFERLEYINRNPQ
LKLRKEEEKRLQKLSAKTIADNSCSIEQYLEMLREVDLFCDDGISDSNCM
DPCCSRCLIHKNQL
Run BLAST on NCBI

transcript from alignment at sc0003432:7079..9925-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042454 ID=TCONS_00042454|Name=TCONS_00042454|organism=Clytia hemisphaerica|type=transcript|length=2847bp|location=Sequence derived from alignment at sc0003432:7079..9925- (Clytia hemisphaerica)
CCTCACAAATATTTAGAGTGTAGAGTCTTGAGAAGCACTAGTGAAAGGTG
AAAACAACAGCTTTTTAATTGGATATTCTTTTTCCGGGAAATCTGTTAGA
GACAAAACTAGAGTGAAAAAGTGGTATGCGCCGAGTTTAAAAGTATTGGC
CATGGGGCACATCATAATACTGCAAAAGAGTCCTTGTCACAAATACCGAA
CAGAACAGTCATCGCTGCAGGATGTAGAGTAATTTTAACAAAAAATCAAG
GGTGTATGACTAGGCTTGGTTTGAACAATGGTGCAATAGGAACTGTCGTT
AGTATTATTTATAAACCTAACGTTAGACCACCCCAGATGCCAGAGTTTGT
TATTGTTGACTTTCCAAGATACAAAGGCCCCGTCTGGGACGAACTGCACC
CCACTTGGGTTCCAATAACGGCAAATGTTGTCACTTGTGAGGATGTCAGA
AAATGTTGTAGACGTACTGGTTTTCCATTGATCACAGGTTATGCTATCAC
TATAGCTAAATCGCAAGGTATGACCATTGGACCAAATCAACAAGTCACAA
ATGTCATTATTAAGTTATCACCCGAAACTAGGATGGAACAGACAAACTGT
GGAACATCATACACTGCTTTCTCGCGTGTCACACAAGATAAAGATTGGTG
TTTAGCAGAACCCGTTCCTTTTGAACGTTTGGAATACATCAATAGAAACC
CACAACTTAAACTGAGAAAGGAAGAGGAAAAAAGACTACAGAAGCTCTCC
GCAAAGACAATTGCTGACAATTCGTGTTCAATTGAACAATACCTAGAGAT
GTTACGTGAAGTTGATTTATTCTGTGATGATGGTATATCAGATTCCAACT
GCATGGACCCTTGTTGCTCTAGATGTTTGATTCATAAGAATCAGCTATAA
ATAATAGAAAATACTAGTTACGAACAGTAGTATAAACAGTTGCCAGAGAA
AAGTGATGTGAATATAATAAAAATATGTAGATTGTACAATAGTGTTGCAA
TAAGGAAATGGTGTCACTTGTATAAGTTGTTATTGGAGTTGGGCATTATG
TTTAATGCATGTCTGGAAGGGTGGTAGGGAGGCCCAGACACAATGAGTGT
ATGTTCCACTCACATTTCATGAAATGATTCCATCTGATATGTTAAGCAGA
TGTATATATACCACACTTTTGAAAATGTTGATGTTATGTGTGGAAGTAAC
ATTCAGGCAATCTGATAAGTTGTAGTCATATTGCTGAAGAATGTTAAAAT
TATTGAGTGTATGTTCCACTCACATTTCATGAAATGATTCCATCTGATAT
GTTAAGCAGATGTATATATACCACACTTTTGAATATTGATGTTATGTGTG
GAAGTAACATTCAGGCAATCTTATACATATATCATTATTGTATTATTTAA
AGTTAATTTATTTTATTTTTCAGCAAAAAATACTAAAATGAAAGTGGAAA
AAAGATTTAACCGATTTTATTGTGAAAAAAGCCCCAAAGCTGCTTGTTCA
ACGGGTTGTTCAACCAATCAGACGACAGACTTCGTCGTGAATAAAGAGCA
GCAGGTTAGAGAGGAAATGGAGGCGCGCATGAATGAAATGAAAGAGAAAC
ACGAGAGAGAAATGAACGAGTTAAGGGCAAGTATCAAAGAACACCAAGAG
GAAAATGAGGATCAAAACCAAGACGAAGACGACATGCTTTTAGAGGAAGG
AAACGAACTGGAAAACTCGCCAGCAACAGAAGTAATTTCAGTCATTTGTA
TTGTATTATCATTCACAAACAAGGGAACGATATTCTTTAAATGATCACGA
ATTCTAATAGTTTAGCCTTCGAAAATAAAAGATACTTAAAAAACAAGGAG
GTTTCGTTAACCTCTATAGGAAGTATTGTTCGTCAACAAAAATCCAAAAC
CAAATAATTTTCTCCTCAACAAAATTATATTTTAGGAACTGACACGTGAA
GCCTTCGATTTGTACAGGGTCACTCACCCAGGGCCTGCATCCAATAATGC
ATATCAAAAATGGAAGAGTCTCGGTGGAGAAGATGCCCCGTGGTTTGTTT
GGCATGTGCGGAAGCGGGGCAGGGGTAGAGCGTGAGGACGGTGAGGTAGA
GGGGGTAGAGCGAGAGGACGGGGAGGCAGAGGGGTAAGCGTTTTGAGTAG
GATAGGAAGGAGTGATCGGGGTAGAGGGAATGTGGGTAGAGCTGACAGGG
GTGGTAGTATTGGTAAGAAGGTATGGGATAGGGACTTTGGTGGGAGGGTT
GTTTTCAATTTTCAGGTTGAGAAGGGTTGTGTTGGTATTAATCATCTATG
ATAGCTGATTGGTAGTATGTACAAATCAATTCACCAAGACTGCTCATTGC
ATGCATAACACAACCAGGGCGAAATCATACGATTTTAAGAAAAATAAAAA
AAAATCTTAGTATATAACTTTCATCTGATTAGATGATTAATATACAACAT
CCCATTTATCAACCTGAAATTATATATTGTGTTATATCGTTCACTTTCTT
CCCTGGGCGTAGTTGTAGTGTTTAGACTTTCATAGATAGATGTAAGTTCT
ACAGAATAGTACCAACGATCCATACATTTTACAATAAGGTAGGCAAATTC
CATATGTACTGCTGTAAAACATTATCTTTACCACTATTATTCCAAAGACC
CCTGTTTCACAAACCGGTTGGGAAACCCACCCCACTGAAAAATCTAGCCA
AAATGTTGTTCACAATGGGAAAAATACCATACAGTTTCAGCTCCACTGGG
AAAGTTTTATTATTTCATCCCCATGCAGTCTAAGAAAATGCATCTCACTA
GAATGTTTAATTTGGAGAAATAGTGGAAAAACCTTCGACTTCCACTG

Coding sequence (CDS) from alignment at sc0003432:7079..9925-

>TCONS_00042454 ID=TCONS_00042454|Name=TCONS_00042454|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0003432:7079..9925- (Clytia hemisphaerica)
ATGACTAGGCTTGGTTTGAACAATGGTGCAATAGGAACTGTCGTTAGTAT
TATTTATAAACCTAACGTTAGACCACCCCAGATGCCAGAGTTTGTTATTG
TTGACTTTCCAAGATACAAAGGCCCCGTCTGGGACGAACTGCACCCCACT
TGGGTTCCAATAACGGCAAATGTTGTCACTTGTGAGGATGTCAGAAAATG
TTGTAGACGTACTGGTTTTCCATTGATCACAGGTTATGCTATCACTATAG
CTAAATCGCAAGGTATGACCATTGGACCAAATCAACAAGTCACAAATGTC
ATTATTAAGTTATCACCCGAAACTAGGATGGAACAGACAAACTGTGGAAC
ATCATACACTGCTTTCTCGCGTGTCACACAAGATAAAGATTGGTGTTTAG
CAGAACCCGTTCCTTTTGAACGTTTGGAATACATCAATAGAAACCCACAA
CTTAAACTGAGAAAGGAAGAGGAAAAAAGACTACAGAAGCTCTCCGCAAA
GACAATTGCTGACAATTCGTGTTCAATTGAACAATACCTAGAGATGTTAC
GTGAAGTTGATTTATTCTGTGATGATGGTATATCAGATTCCAACTGCATG
GACCCTTGTTGCTCTAGATGTTTGATTCATAAGAATCAGCTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026289XLOC_026289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042454-exon-sc0003432-1575043694:8195..9925TCONS_00042454-exon-sc0003432-1575043694:8195..9925Clytia hemisphaericaexon
TCONS_00042454-exon-sc0003432-1575043694:7152..7990TCONS_00042454-exon-sc0003432-1575043694:7152..7990Clytia hemisphaericaexon
TCONS_00042454-exon-sc0003432-1575043694:7079..7102TCONS_00042454-exon-sc0003432-1575043694:7079..7102Clytia hemisphaericaexon
TCONS_00042454-exon-sc0003432-1510915933:8195..9925TCONS_00042454-exon-sc0003432-1510915933:8195..9925Clytia hemisphaericaexon
TCONS_00042454-exon-sc0003432-1510915933:7152..7990TCONS_00042454-exon-sc0003432-1510915933:7152..7990Clytia hemisphaericaexon
TCONS_00042454-exon-sc0003432-1510915933:7079..7102TCONS_00042454-exon-sc0003432-1510915933:7079..7102Clytia hemisphaericaexon
TCONS_00042454-exon-sc0003432-1491911889:8195..9925TCONS_00042454-exon-sc0003432-1491911889:8195..9925Clytia hemisphaericaexon
TCONS_00042454-exon-sc0003432-1491911889:7152..7990TCONS_00042454-exon-sc0003432-1491911889:7152..7990Clytia hemisphaericaexon
TCONS_00042454-exon-sc0003432-1491911889:7079..7102TCONS_00042454-exon-sc0003432-1491911889:7079..7102Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042454-proteinTCONS_00042454-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003432supercontigsc0003432:7079..9925 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.28364	6.1645	3.70643	2.72849	4.4722	3.47503	5.39849	5.55038	8.37427	5.60053	7.22948	9.28958	4.82964	4.02202	3.4412	3.13462	4.37577	5.55681	8.77599	8.18881	7.97158	7.91682	3.26487	3.49762	11.3573	9.34269	11.0878	13.4828	4.36881	5.18276
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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