TCONS_00042459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042459
Unique NameTCONS_00042459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042459 ID=TCONS_00042459|Name=TCONS_00042459|organism=Clytia hemisphaerica|type=transcript|length=641bp
GCTATTTACTATTTACAAAGGTcagaaaataattaaataaataagttatg
aaaaagtcaaaatataaagataaaaacatataaaaaaatatcacttttgA
ATTAGTATATATGTACATGATGTTAAGGTTAATGCCAGAATTTTCAggcg
aaaataaagaaaacttcGTTTCCTAAATCCACGTACGGAGAAAAGGGTTG
ACCGTAATGTAATTATGTGTTCGCATTtgcattccattttatatccccAC
ATGGGGATGGAACTTCCAGGGGGTTCCAAAAGAAGGTATTAGAAGGGATC
TCAACCTCGACCTTGTGTATCCCAGGCNTTTTATATCCCCACATGGGGAT
GGAACTTCCAGGGGGTTCCAAAAGAAGGTATTAGAAGGGATCTCAACCTC
GACCttgtgtatcccaggctttatttacgttactgatggtCGCCAAAAAA
Tatggcgctatcagtaagcataaaaaagctgataatacacagggaacgag
gttgaggGGATCTAAGGAACTTTTGTGCATTTTTCAAGaaagtttgattt
gatttttttttgcgaagGGGTTGCATGACCAATCATTGTCAACCTATATT
TCCTTATTCCAGCGATGAAACGAGAAGCtcgttgatatttt
Run BLAST on NCBI

transcript from alignment at sc0003434:2795..3435

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042459 ID=TCONS_00042459|Name=TCONS_00042459|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0003434:2795..3435 (Clytia hemisphaerica)
aaaatatcaacgaGCTTCTCGTTTCATCGCTGGAATAAGGAAATATAGGT
TGACAATGATTGGTCATGCAACCCcttcgcaaaaaaaaatcaaatcaaac
tttCTTGAAAAATGCACAAAAGTTCCTTAGATCCcctcaacctcgttccc
tgtgtattatcagcttttttatgcttactgatagcgccatATTTTTTGGC
GaccatcagtaacgtaaataaagcctgggatacacaaGGTCGAGGTTGAG
ATCCCTTCTAATACCTTCTTTTGGAACCCCCTGGAAGTTCCATCCCCATG
TGGGGATATAAAANGCCTGGGATACACAAGGTCGAGGTTGAGATCCCTTC
TAATACCTTCTTTTGGAACCCCCTGGAAGTTCCATCCCCATGTggggata
taaaatggaatgcaAATGCGAACACATAATTACATTACGGTCAACCCTTT
TCTCCGTACGTGGATTTAGGAAACgaagttttctttattttcgccTGAAA
ATTCTGGCATTAACCTTAACATCATGTACATATATACTAATTcaaaagtg
atatttttttatatgtttttatctttatattttgactttttcataactta
tttatttaattattttctgACCTTTGTAAATAGTAAATAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026293XLOC_026293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042459-exon-sc0003434-1491911889:2795..3435TCONS_00042459-exon-sc0003434-1491911889:2795..3435Clytia hemisphaericaexon
TCONS_00042459-exon-sc0003434-1510915933:2795..3435TCONS_00042459-exon-sc0003434-1510915933:2795..3435Clytia hemisphaericaexon
TCONS_00042459-exon-sc0003434-1575043694:2795..3435TCONS_00042459-exon-sc0003434-1575043694:2795..3435Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003434supercontigsc0003434:2795..3435 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0821244	0	0	0.0909718	0.358732	0.273581	0.214558	0.817853	0.560094	0.259757	0.501658	0.665879	1.47903	2.27552	0.982609	1.45128	0.986408	1.71095	0.6111	0.0922565	0.95453	0.233052	0.376649	0.342429	1.59871	1.11591	0	0	0.182303	0.0928691
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top