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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042460 ID=TCONS_00042460|Name=TCONS_00042460|organism=Clytia hemisphaerica|type=transcript|length=1307bp
AGAAGTTCACCAGTACACAACTTGAAAAACTCGAAAAACACATGCATACA
TCACTTTCACTCCTAGAACGCGACTTCCCCTCCATCTTATTGAATATCAC
GACACACATATGTCACCATTTCGtcgaaaatatgaaaaagtttGGACCCT
TGTACGCTACGTGGATGTACTGCTTAGAACGTTTCAACTCTTGGATAACC
AGAAGGTGCAACAATAAGAACCACATGGAAAGATGTGTTATGGAAACCTA
CCAGCTATTTGATTGggtgtttttttgtgaaatcacAAATAAATTTCCAA
ATGCGTTCGATGCTAGAAATACCGTCTGCCAAAAGACACTTCTTGCTAGT
TGAGAGTTCGAACCAAGCAATCAATCAAGAAAGAGAGACAAACCTACGTT
GTTAAATGATGCTGAAAAATCCGCCATCAACACTCTTCTAAAGCCAGCAG
AAAAGATTGAAAGTGCCACCTTCATCAAAAAGTTTAACCAAGTCAACGAG
TTCTTAGAAGAATACTCGATATCCGTGGNTATGCTGAAAAATCCACCATC
AACACTCTTCTAAAGCCAGCAGAAAAGATTGAAAGTGCCACCTTCATCAA
AAAGTTTAACCAAGTCAACGAGTTCTTAGAAGAATACTCGATATCCGTGG
GTAGCTATTGCCAATTCAATGATGCTAACTTCTGTAGAGTCGAGAGAATT
TTGAGAGTTGACATCGAAGGTACAGACACTTTCGTCCTTCACATCAAAAT
GTTTCAATTGTTTACAGATCAAAACACAGgaTTGAAATACGGACTTCAAA
ACGGCACGTCATTGGGCGATTCTCTAACTTTACCAAAAAATGTTGGAGAA
CCAGTAGTCTACGCAAACGACGATCAAAAAATTTGGCTTCTTACGATCAA
ACCCGAGTTAGAATTCGTATGGTTGGAGGAACACATTAATTCTTGAATCA
TTGCActcttttatatatttttttatttttgcttagcaaaatctcatttt
cagctgaaatttatgCTTATGTATATGCTTAGACttcgatttgttgattt
tctctaggttcaagaaaattttgtatttttaaactttttaagttgGAACA
TTGATTCAGCTCAaagaatgaaagttttctttgaaatttggcaccGCAGG
TGTAAATCTTTGGTCCAAGAAAGCTCAAACAGTtttaaaagtaaccctaa
aaaggtcagcgttttagaaaagaTGCACAATTCTTTTGCATTTTAGCTTG
GGgatatgcttagcattatgcttttttttgctgaatttgagCCAAAGTAT
GCTTGTA Run BLAST on NCBI protein sequence of TCONS_00042460-protein >TCONS_00042460-protein ID=TCONS_00042460-protein|Name=TCONS_00042460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
KFTSTQLEKLEKHMHTSLSLLERDFPSILLNITTHICHHFVENMKKFGPL
YATWMYCLERFNSWITRRCNNKNHMERCVMETYQLFDWVFFCEITNKFPN
AFDARNTVCQKTLLAS Run BLAST on NCBI transcript from alignment at sc0003439:6531..8552- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042460 ID=TCONS_00042460|Name=TCONS_00042460|organism=Clytia hemisphaerica|type=transcript|length=2022bp|location=Sequence derived from alignment at sc0003439:6531..8552- (Clytia hemisphaerica)
AGAAGTTCACCAGTACACAACTTGAAAAACTCGAAAAACACATGCATACA
TCACTTTCACTCCTAGAACGCGACTTCCCCTCCATCTTATTGAATATCAC
GACACACATATGTCACCATTTCGTCGAAAATATGAAAAAGTTTGGACCCT
TGTACGCTACGTGGATGTACTGCTTAGAACGTTTCAACTCTTGGATAACC
AGAAGGTGCAACAATAAGAACCACATGGAAAGATGTGTTATGGAAACCTA
CCAGGTAATATTGAAATCAATTTTTGGAGGCGTGGTACACACATCTTTTA
CTAGCAAACCCATTTTTTGGCTCAGTGCTGGAGTTGCTAAGGATTCTCAG
GAGTTTAGCCCAAAAGTTGCTTTATGGATTTTGAGCCAAAAACACTTTTT
GAATTTCAAAATTTTACTTCTCACTAAAAATGCCTTTTTGGTATCCAAAA
GAGCTCAATCACAGATTTTAATGTCAAATAATGGCAAAACGTCACCTTTT
GGGTTTAATTGGTTAGACTAGGTTATTATGTCACAGTTGATTAGTTGTTG
GGGGATTTTCAGGGCTCAACCCTTACCAGCTAAGTTGCTTAAAGAATTTT
ATGTATCTAATTTATTAAAGTGTATGCGAAAGTACCTAGTGGAGAAAAAA
TAAAGAGAGAAAAAGCACACTTTATTTTGATGACATTAGATGACAAAACA
CAATTTTTCAATGACGTTAATTTTCTACGTTTACAAAATTCTGTGAAAAA
AATGGAAAAATTTTATTTTTCATTATAGCTATTTGATTGGGTGTTTTTTT
GTGAAATCACAAATAAATTTCCAAATGCGTTCGATGCTAGAAATACCGTC
TGCCAAAAGACACTTCTTGCTAGTTGAGAGTTCGAACCAAGCAATCAATC
AAGAAAGAGAGACAAACCTACGTTGTTAAATGATGCTGAAAAATCCGCCA
TCAACACTCTTCTAAAGCCAGCAGAAAAGATTGAAAGTGCCACCTTCATC
AAAAAGTTTAACCAAGTCAACGAGTTCTTAGAAGAATACTCGATATCCGT
GGNTATGCTGAAAAATCCACCATCAACACTCTTCTAAAGCCAGCAGAAAA
GATTGAAAGTGCCACCTTCATCAAAAAGTTTAACCAAGTCAACGAGTTCT
TAGAAGAATACTCGATATCCGTGGGTAGCTATTGCCAATTCAATGATGCT
AACTTCTGTAGAGTCGAGAGAATTTTGAGAGTTGACATCGAAGGTACAGA
CACTTTCGTCCTTCACATCAAAATGTTTCAATTGTTTACAGATCAAAACA
CAGGTAAATAGTTGACAATACGCATTTTTATTAGGAACAAGTTTATAAAA
TTCGTTGCATGAGCATTGTCTCACTCAGTTTGGAAAAAGAAATTATAAAT
TATATTGAAATTGTTTTTAGAATTTTAGTTTCAAAGAAGTCAATTTGAAA
GAGGGAGTAATACGCTTGATATGAAAAATTAATTTTTTTTCTAGGATTGA
AATACGGACTTCAAAACGGCACGTCATTGGGCGATTCTCTAACTTTACCA
AAAAATGTTGGAGAACCAGTAGTCTACGCAAACGACGATCAAAAAATTTG
GCTTCTTACGATCAAACCCGAGTTAGAATTCGTATGGTTGGAGGAACACA
TTAATTCTTGAATCATTGCACTCTTTTATATATTTTTTTATTTTTGCTTA
GCAAAATCTCATTTTCAGCTGAAATTTATGCTTATGTATATGCTTAGACT
TCGATTTGTTGATTTTCTCTAGGTTCAAGAAAATTTTGTATTTTTAAACT
TTTTAAGTTGGAACATTGATTCAGCTCAAAGAATGAAAGTTTTCTTTGAA
ATTTGGCACCGCAGGTGTAAATCTTTGGTCCAAGAAAGCTCAAACAGTTT
TAAAAGTAACCCTAAAAAGGTCAGCGTTTTAGAAAAGATGCACAATTCTT
TTGCATTTTAGCTTGGGGATATGCTTAGCATTATGCTTTTTTTTGCTGAA
TTTGAGCCAAAGTATGCTTGTA Coding sequence (CDS) from alignment at sc0003439:6531..8552- >TCONS_00042460 ID=TCONS_00042460|Name=TCONS_00042460|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0003439:6531..8552- (Clytia hemisphaerica)
CTATTTGATTGGGTGTTTTTTTGTGAAATCACAAATAAATTTCCAAATGC
GTTCGATGCTAGAAATACCGTCTGCCAAAAGACACTTCTTGCTAGTTGAA
AGTTCACCAGTACACAACTTGAAAAACTCGAAAAACACATGCATACATCA
CTTTCACTCCTAGAACGCGACTTCCCCTCCATCTTATTGAATATCACGAC
ACACATATGTCACCATTTCGTCGAAAATATGAAAAAGTTTGGACCCTTGT
ACGCTACGTGGATGTACTGCTTAGAACGTTTCAACTCTTGGATAACCAGA
AGGTGCAACAATAAGAACCACATGGAAAGATGTGTTATGGAAACCTACCA
GCTATTTGATTGGGTGTTTTTTTGTGAAATCACAAATAAATTTCCAAATG
CGTTCGATGCTAGAAATACCGTCTGCCAAAAGACACTTCTTGCTAGTTGA
AAGTTCACCAGTACACAACTTGAAAAACTCGAAAAACACATGCATACATC
ACTTTCACTCCTAGAACGCGACTTCCCCTCCATCTTATTGAATATCACGA
CACACATATGTCACCATTTCGTCGAAAATATGAAAAAGTTTGGACCCTTG
TACGCTACGTGGATGTACTGCTTAGAACGTTTCAACTCTTGGATAACCAG
AAGGTGCAACAATAAGAACCACATGGAAAGATGTGTTATGGAAACCTACC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042460-exon-sc0003439-1575043694:8299..8552 | TCONS_00042460-exon-sc0003439-1575043694:8299..8552 | Clytia hemisphaerica | exon |
| TCONS_00042460-exon-sc0003439-1575043694:7250..7774 | TCONS_00042460-exon-sc0003439-1575043694:7250..7774 | Clytia hemisphaerica | exon |
| TCONS_00042460-exon-sc0003439-1575043694:6531..7058 | TCONS_00042460-exon-sc0003439-1575043694:6531..7058 | Clytia hemisphaerica | exon |
| TCONS_00042460-exon-sc0003439-1510915933:8299..8552 | TCONS_00042460-exon-sc0003439-1510915933:8299..8552 | Clytia hemisphaerica | exon |
| TCONS_00042460-exon-sc0003439-1510915933:7250..7774 | TCONS_00042460-exon-sc0003439-1510915933:7250..7774 | Clytia hemisphaerica | exon |
| TCONS_00042460-exon-sc0003439-1510915933:6531..7058 | TCONS_00042460-exon-sc0003439-1510915933:6531..7058 | Clytia hemisphaerica | exon |
| TCONS_00042460-exon-sc0003439-1491911889:8299..8552 | TCONS_00042460-exon-sc0003439-1491911889:8299..8552 | Clytia hemisphaerica | exon |
| TCONS_00042460-exon-sc0003439-1491911889:7250..7774 | TCONS_00042460-exon-sc0003439-1491911889:7250..7774 | Clytia hemisphaerica | exon |
| TCONS_00042460-exon-sc0003439-1491911889:6531..7058 | TCONS_00042460-exon-sc0003439-1491911889:6531..7058 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003439 | supercontig | sc0003439:6531..8552 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025452 | DUF4218 |
Blast
The following BLAST results are available for this feature:
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