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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042464 ID=TCONS_00042464|Name=TCONS_00042464|organism=Clytia hemisphaerica|type=transcript|length=2183bp
tttctgatgaaatcatactaatctgaaactattaggcctttatgaacttt
ctagaacaataatcttgctccaatcttgagaaacactggaaaaataggtt
agtattccctgccataatttcacagatttcctctgctttctgcttgaaaa
cgctgtcgtatagccgaaaacgaaagtgaaactgtgaaaacgtccgcaaa
ttcgggcccagtcctcttccgagacggaggctaatacagTGCCGTTCCCA
TTAAATACTGTAATCATTCTAGGCAATTTTGGGAAagttatttttgcatt
tttatttccagctggaaatagagagccgttcccataaaatatctatattg
ctctaacattttttcttttttatctccagctggaaatagagagccGTTCC
CATAAAATATCTATATTGCTCTGACATTTGCtacatttattttccttttt
catctcCATCTGGAAATAAAGAGCCGTTCCTATAAATTTGTATATCTCCT
CCTGGCAAATGTGAANNTTTGGAGCCGTTCCGGACAACCCGATTATgttc
attttatagaaattttctcctggctGGCAAAAAGGAACGGCTTTTTCGTG
TTTTgcctcggtggctgcttctgaacCATCCCCCTTTTATCTGGTACAGT
ATTCAGAATCAAGTCTCAGAGTTTTATCGAAGATCTTTCTTTTCCAGGTA
AGTTGACATCAGAAACTTCAGGATCAAATAAAACGTTTGTGGTGAGCGCA
GCAGCTGGTTCATGCGGTTCACTCGCTGGGCAATTCGCCAAATGTTATGG
TTGCTCCAACGTCATTGGAATCTGCGGAAGTGACGCTAAATGtcatcttt
tgaaagaaaggTTAAATTTTACAGGGGTCATAAATTATAAGACTGAAAAT
GTCGAAGATCGTTTGAGAGAACTTTGTCCTAATGGCGTTGATTTATACTT
TGATAATGTCGGAGGAACGATAAGCGAGGCTGTGATTACTAATATGGTGA
CTGAGGGACGAATCATTCTATGTGGAGCGATATCACAGTATAACAAAGAT
TTACCCTACCCTCCACCTGTTTCAGAACGAGTctccaaaatattaaaaga
acGCTCCATTTTCAACGATCGTTTTCTTGTTTTGAGATACGAAGATCAGT
TCGCGAGCGGAATGGAGAGTTTGAAACAGCTTCAACCTCATGTAGAACTT
TTAGAAACTGTTTATGAGGGATTAGAGAAAGCTGGCAATGCATTTTGTGA
TATGATGAACGGCAAGAATATCGGGAAAATGCTTGTTAAGTGTTAATATT
TGATCTGTTTTTTCTATCAACTTTTATAAAAGTTTTATTGGTGTGTCAAT
TTTCATATacataaacaaataaataaaataaaagtggaAATGTAGAAATG
TTTTGTGCggatcaataaaataaaaatttgaaattcagtgATGAAAAATT
TACGTGTGATTATTATACAACTTATACCAAATCTTGATACTAAAAAGTCT
TTATAGAAATTACTTTTATTAGAATATTGGGGTTTCGTGGTGTATcgctt
ttctttctcttttgtttttagAGTGGCTTTTGTCGAGGGTCAAAATTCTT
TCTGCCACAAAAGGTAGTTAATCTTATTCTTTCTCTTCATCTCGAATTTT
AGTCCGAACATTCATTAGGGCTTCACCAAGCCAGTTACTTCCTCTCCAAT
TTTTAGGATCCAATGCCCGTTTATCGTTTTTACCAAGCCCGATTCCCCAT
CGTTTGTCAAAAGGACTTGCCTCCGCAAGGATGTCATCGCCTGTTGAAAG
TATATGAGTTTTCATATgctcattttgagaaaatttagcGTAATTTCCCT
CTTCTACGACAACTCTGGATTTCTCTTTCCATATTTCATCGTCATAGTTA
TTCACTTTCCGACcaaattgtttcattttctttggGACGGTCTCGCGAAG
AATATTCGCGGCCATTACGTTGTCCTTAAAAACAACAGCTTTTTGGTACA
TCATATACTGCTCACAACAATTATACTCTATGCCATCTACAAAAAATTTT
GCAGGATGGAACTGGCTAAAAATATTGTCTGTTTTCCAAAATAAGGTCAC
CTTTCTTTTactcattttctattttatttgacTGAGTCTTGACGGTCCTG
TGTCTCGTTGGAAAATGTCATACTGAATGTTTT Run BLAST on NCBI protein sequence of TCONS_00042464-protein >TCONS_00042464-protein ID=TCONS_00042464-protein|Name=TCONS_00042464-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MSKRKVTLFWKTDNIFSQFHPAKFFVDGIEYNCCEQYMMYQKAVVFKDNV
MAANILRETVPKKMKQFGRKVNNYDDEIWKEKSRVVVEEGNYAKFSQNEH
MKTHILSTGDDILAEASPFDKRWGIGLGKNDKRALDPKNWRGSNWLGEAL
MNVRTKIRDEEKE Run BLAST on NCBI transcript from alignment at sc0003441:8481..10663 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042464 ID=TCONS_00042464|Name=TCONS_00042464|organism=Clytia hemisphaerica|type=transcript|length=2183bp|location=Sequence derived from alignment at sc0003441:8481..10663 (Clytia hemisphaerica)
AAAACATTCAGTATGACATTTTCCAACGAGACACAGGACCGTCAAGACTC
AgtcaaataaaatagaaaatgagtAAAAGAAAGGTGACCTTATTTTGGAA
AACAGACAATATTTTTAGCCAGTTCCATCCTGCAAAATTTTTTGTAGATG
GCATAGAGTATAATTGTTGTGAGCAGTATATGATGTACCAAAAAGCTGTT
GTTTTTAAGGACAACGTAATGGCCGCGAATATTCTTCGCGAGACCGTCcc
aaagaaaatgaaacaatttgGTCGGAAAGTGAATAACTATGACGATGAAA
TATGGAAAGAGAAATCCAGAGTTGTCGTAGAAGAGGGAAATTACgctaaa
ttttctcaaaatgagcATATGAAAACTCATATACTTTCAACAGGCGATGA
CATCCTTGCGGAGGCAAGTCCTTTTGACAAACGATGGGGAATCGGGCTTG
GTAAAAACGATAAACGGGCATTGGATCCTAAAAATTGGAGAGGAAGTAAC
TGGCTTGGTGAAGCCCTAATGAATGTTCGGACTAAAATTCGAGATGAAGA
GAAAGAATAAGATTAACTACCTTTTGTGGCAGAAAGAATTTTGACCCTCG
ACAAAAGCCACTctaaaaacaaaagagaaagaaaagcgATACACCACGAA
ACCCCAATATTCTAATAAAAGTAATTTCTATAAAGACTTTTTAGTATCAA
GATTTGGTATAAGTTGTATAATAATCACACGTAAATTTTTCATcactgaa
tttcaaatttttattttattgatccGCACAAAACATTTCTACATTtccac
ttttattttatttatttgtttatgtATATGAAAATTGACACACCAATAAA
ACTTTTATAAAAGTTGATAGAAAAAACAGATCAAATATTAACACTTAACA
AGCATTTTCCCGATATTCTTGCCGTTCATCATATCACAAAATGCATTGCC
AGCTTTCTCTAATCCCTCATAAACAGTTTCTAAAAGTTCTACATGAGGTT
GAAGCTGTTTCAAACTCTCCATTCCGCTCGCGAACTGATCTTCGTATCTC
AAAACAAGAAAACGATCGTTGAAAATGGAGCgttcttttaatattttgga
gACTCGTTCTGAAACAGGTGGAGGGTAGGGTAAATCTTTGTTATACTGTG
ATATCGCTCCACATAGAATGATTCGTCCCTCAGTCACCATATTAGTAATC
ACAGCCTCGCTTATCGTTCCTCCGACATTATCAAAGTATAAATCAACGCC
ATTAGGACAAAGTTCTCTCAAACGATCTTCGACATTTTCAGTCTTATAAT
TTATGACCCCTGTAAAATTTAAcctttctttcaaaagatgaCATTTAGCG
TCACTTCCGCAGATTCCAATGACGTTGGAGCAACCATAACATTTGGCGAA
TTGCCCAGCGAGTGAACCGCATGAACCAGCTGCTGCGCTCACCACAAACG
TTTTATTTGATCCTGAAGTTTCTGATGTCAACTTACCTGGAAAAGAAAGA
TCTTCGATAAAACTCTGAGACTTGATTCTGAATACTGTACCAGATAAAAG
GGGGATGgttcagaagcagccaccgaggcAAAACACGAAAAAGCCGTTCC
TTTTTGCCagccaggagaaaatttctataaaatgaacATAATCGGGTTGT
CCGGAACGGCTCCAAANNTTCACATTTGCCAGGAGGAGATATACAAATTT
ATAGGAACGGCTCTTTATTTCCAGATGgagatgaaaaaggaaaataaatg
taGCAAATGTCAGAGCAATATAGATATTTTATGGGAACggctctctattt
ccagctggagataaaaaagaaaaaatgttagagcaatatagatattttat
gggaacggctctctatttccagctggaaataaaaatgcaaaaataactTT
CCCAAAATTGCCTAGAATGATTACAGTATTTAATGGGAACGGCActgtat
tagcctccgtctcggaagaggactgggcccgaatttgcggacgttttcac
agtttcactttcgttttcggctatacgacagcgttttcaagcagaaagca
gaggaaatctgtgaaattatggcagggaatactaacctatttttccagtg
tttctcaagattggagcaagattattgttctagaaagttcataaaggcct
aatagtttcagattagtatgatttcatcagaaa Coding sequence (CDS) from alignment at sc0003441:8481..10663 >TCONS_00042464 ID=TCONS_00042464|Name=TCONS_00042464|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at sc0003441:8481..10663 (Clytia hemisphaerica)
atgagtAAAAGAAAGGTGACCTTATTTTGGAAAACAGACAATATTTTTAG
CCAGTTCCATCCTGCAAAATTTTTTGTAGATGGCATAGAGTATAATTGTT
GTGAGCAGTATATGATGTACCAAAAAGCTGTTGTTTTTAAGGACAACGTA
ATGGCCGCGAATATTCTTCGCGAGACCGTCccaaagaaaatgaaacaatt
tgGTCGGAAAGTGAATAACTATGACGATGAAATATGGAAAGAGAAATCCA
GAGTTGTCGTAGAAGAGGGAAATTACgctaaattttctcaaaatgagcAT
ATGAAAACTCATATACTTTCAACAGGCGATGACATCCTTGCGGAGGCAAG
TCCTTTTGACAAACGATGGGGAATCGGGCTTGGTAAAAACGATAAACGGG
CATTGGATCCTAAAAATTGGAGAGGAAGTAACTGGCTTGGTGAAGCCCTA
ATGAATGTTCGGACTAAAATTCGAGATGAAGAGAAAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042464-exon-sc0003441-1491911889:8481..10663 | TCONS_00042464-exon-sc0003441-1491911889:8481..10663 | Clytia hemisphaerica | exon |
| TCONS_00042464-exon-sc0003441-1510915933:8481..10663 | TCONS_00042464-exon-sc0003441-1510915933:8481..10663 | Clytia hemisphaerica | exon |
| TCONS_00042464-exon-sc0003441-1575043694:8481..10663 | TCONS_00042464-exon-sc0003441-1575043694:8481..10663 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003441 | supercontig | sc0003441:8481..10663 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012816 | NADAR |
Blast
BLAST of TCONS_00042464 vs. Swiss-Prot (Human)
Match: PTGR2 (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 4.696e-56 Identity = 109/193 (56.48%), Postives = 133/193 (68.91%), Query Frame = 1
Query: 715 TSGSNKTFVVXXXXXXXXXXXXQFAKCYGCSNVIGICGSDAKCHLLKERLNFTGVINYKTENVEDRLRELCPNGVDLYFDNVGGTISEAVITNMVTEGRIILCGAISQYNKDLPYPPPVSERVSKILKERSIFNDRFLVLRYEDQFASGMESLKQL--QPHVELLETVYEGLEKAGNAFCDMMNGKNIGKMLV 1287
T+GSNKT VVS AAG+CGS+AGQ GCS V+GICG+ KC LL L F INYK +NV ++LRE CP GVD+YFDNVGG IS+ VI+ M IILCG ISQYNKD+PYPPP+S + I KER+I +RFLVL Y+D+F G+ L Q + +++ ETV GLE G AF MM G NIGK +V
Sbjct: 151 TAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIV 343
The following BLAST results are available for this feature:
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