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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042471 ID=TCONS_00042471|Name=TCONS_00042471|organism=Clytia hemisphaerica|type=transcript|length=1236bp
gttttcGGGAAACTGTTCCTTGTCCGAGAAGGATACCTATACGCTCAGCA
TATGTTGCGCCAGGCGCTGTCTATGTTTCAAGGAATTCTTCCGGATTCAA
ATGTCAAACATGATGAAGAAGACGATTCTGAAAAGGAAAACGAGGATGAA
ATTGTTATGGAAATCTTCCAACAGATTTTCGATAATGATATCGATGACGA
TGGTTTTGACGTTGAAAATGACGAAGATGAAATTAGAGATGAAATCCATA
TTGACCTTGATTTGGTTTTATCCACTGGAAATGACCTCATGAATGGTGGT
ACTGGAGACATGGTAGAAAATGTAGTGTACTTCCCTCCTGAGCTTAGCCA
AGCAAGAATGAACGGACGAAATGGAAGTTCTGCTTGTACAACTATTGCTC
TTCTTGTTGGTCATTTTATGCCACCATTATTCCTTGACTGGTGCTCGATT
GAGGTTTTGGAATGCTTTGTTGGGTGTATTGAAATCGGAAATGTTTTTCA
CGACAATCGAACCTCAACAAATGTCGATGAAAGCCTCTCAATACTTCCTT
CCGTACTTGATATAGATATTTCCTCTTTTACAAATACGATTTTTGGTAAT
CTCTATGGATGTATTGAACATTTCGCGGGTTATGTTGTCTTGACAGGAAA
GGGACGATCTTTTTGTGCTATCCCTTGTCCAGACTTTGTTGTCATTTTCG
ACTCCCATTTACATGGTGATCATGGAGCTACGattacaaaactttttgat
caGGAGGACCTTCAAAGAATGATGAACCTTTCAAATGATGACGTGATCGA
TATTTATTTTATTGCTgacaaatagtatttatttattaaatcttgtaatt
aaatatttcccgttttccaaaagggaaatatttattaaaacgggctttct
ccataatttcccgtgtcaaaacgccttccgtacacCCTGACTAACGCCCG
TTTTTAATTTCATAGcgaaaaatgcatccagtgaaatataagtaatgtat
catgattcaagtcgactgataaactatatataatgtatgttacaagttcc
ttacggattctcaagcccggttataataagtagtagcagacccgactggc
aattgttatgtagcaggttgagtcatgagtttttgctagaaagctgaagt
ttgttttcaagttaaatctttaaaataaatcaaactgtgtgggtttcttt
acttccaaacaacctaccaatagttttggaacactc Run BLAST on NCBI protein sequence of TCONS_00042471-protein >TCONS_00042471-protein ID=TCONS_00042471-protein|Name=TCONS_00042471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
VFGKLFLVREGYLYAQHMLRQALSMFQGILPDSNVKHDEEDDSEKENEDE
IVMEIFQQIFDNDIDDDGFDVENDEDEIRDEIHIDLDLVLSTGNDLMNGG
TGDMVENVVYFPPELSQARMNGRNGSSACTTIALLVGHFMPPLFLDWCSI
EVLECFVGCIEIGNVFHDNRTSTNVDESLSILPSVLDIDISSFTNTIFGN
LYGCIEHFAGYVVLTGKGRSFCAIPCPDFVVIFDSHLHGDHGATITKLFD
QEDLQRMMNLSNDDVIDIYFIADK Run BLAST on NCBI transcript from alignment at sc0003444:10239..11474 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042471 ID=TCONS_00042471|Name=TCONS_00042471|organism=Clytia hemisphaerica|type=transcript|length=1236bp|location=Sequence derived from alignment at sc0003444:10239..11474 (Clytia hemisphaerica)
gagtgttccaaaactattggtaggttgtttggaagtaaagaaacccacac
agtttgatttattttaaagatttaacttgaaaacaaacttcagctttcta
gcaaaaactcatgactcaacctgctacataacaattgccagtcgggtctg
ctactacttattataaccgggcttgagaatccgtaaggaacttgtaacat
acattatatatagtttatcagtcgacttgaatcatgatacattacttata
tttcactggatgcatttttcgCTATGAAATTAAAAACGGGCGTTAGTCAG
Ggtgtacggaaggcgttttgacacgggaaattatggagaaagcccgtttt
aataaatatttcccttttggaaaacgggaaatatttaattacaagattta
ataaataaatactatttgtcAGCAATAAAATAAATATCGATCACGTCATC
ATTTGAAAGGTTCATCATTCTTTGAAGGTCCTCCtgatcaaaaagttttg
taatCGTAGCTCCATGATCACCATGTAAATGGGAGTCGAAAATGACAACA
AAGTCTGGACAAGGGATAGCACAAAAAGATCGTCCCTTTCCTGTCAAGAC
AACATAACCCGCGAAATGTTCAATACATCCATAGAGATTACCAAAAATCG
TATTTGTAAAAGAGGAAATATCTATATCAAGTACGGAAGGAAGTATTGAG
AGGCTTTCATCGACATTTGTTGAGGTTCGATTGTCGTGAAAAACATTTCC
GATTTCAATACACCCAACAAAGCATTCCAAAACCTCAATCGAGCACCAGT
CAAGGAATAATGGTGGCATAAAATGACCAACAAGAAGAGCAATAGTTGTA
CAAGCAGAACTTCCATTTCGTCCGTTCATTCTTGCTTGGCTAAGCTCAGG
AGGGAAGTACACTACATTTTCTACCATGTCTCCAGTACCACCATTCATGA
GGTCATTTCCAGTGGATAAAACCAAATCAAGGTCAATATGGATTTCATCT
CTAATTTCATCTTCGTCATTTTCAACGTCAAAACCATCGTCATCGATATC
ATTATCGAAAATCTGTTGGAAGATTTCCATAACAATTTCATCCTCGTTTT
CCTTTTCAGAATCGTCTTCTTCATCATGTTTGACATTTGAATCCGGAAGA
ATTCCTTGAAACATAGACAGCGCCTGGCGCAACATATGCTGAGCGTATAG
GTATCCTTCTCGGACAAGGAACAGTTTCCCgaaaac Coding sequence (CDS) from alignment at sc0003444:10239..11474 >TCONS_00042471 ID=TCONS_00042471|Name=TCONS_00042471|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at sc0003444:10239..11474 (Clytia hemisphaerica)
ctatttgtcAGCAATAAAATAAATATCGATCACGTCATCATTTGAAAGGT
TCATCATTCTTTGAAGGTCCTCCtgatcaaaaagttttgtaatCGTAGCT
CCATGATCACCATGTAAATGGGAGTCGAAAATGACAACAAAGTCTGGACA
AGGGATAGCACAAAAAGATCGTCCCTTTCCTGTCAAGACAACATAACCCG
CGAAATGTTCAATACATCCATAGAGATTACCAAAAATCGTATTTGTAAAA
GAGGAAATATCTATATCAAGTACGGAAGGAAGTATTGAGAGGCTTTCATC
GACATTTGTTGAGGTTCGATTGTCGTGAAAAACATTTCCGATTTCAATAC
ACCCAACAAAGCATTCCAAAACCTCAATCGAGCACCAGTCAAGGAATAAT
GGTGGCATAAAATGACCAACAAGAAGAGCAATAGTTGTACAAGCAGAACT
TCCATTTCGTCCGTTCATTCTTGCTTGGCTAAGCTCAGGAGGGAAGTACA
CTACATTTTCTACCATGTCTCCAGTACCACCATTCATGAGGTCATTTCCA
GTGGATAAAACCAAATCAAGGTCAATATGGATTTCATCTCTAATTTCATC
TTCGTCATTTTCAACGTCAAAACCATCGTCATCGATATCATTATCGAAAA
TCTGTTGGAAGATTTCCATAACAATTTCATCCTCGTTTTCCTTTTCAGAA
TCGTCTTCTTCATCATGTTTGACATTTGAATCCGGAAGAATTCCTTGAAA
CATAGACAGCGCCTGGCGCAACATATGCTGAGCGTATAGGTATCCTTCTC
GGACAAGGAACAGTTTCCCgaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042471-exon-sc0003444-1491911889:10239..11474 | TCONS_00042471-exon-sc0003444-1491911889:10239..11474 | Clytia hemisphaerica | exon |
| TCONS_00042471-exon-sc0003444-1510915933:10239..11474 | TCONS_00042471-exon-sc0003444-1510915933:10239..11474 | Clytia hemisphaerica | exon |
| TCONS_00042471-exon-sc0003444-1575043694:10239..11474 | TCONS_00042471-exon-sc0003444-1575043694:10239..11474 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003444 | supercontig | sc0003444:10239..11474 . |
Blast
The following BLAST results are available for this feature:
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