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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042475 ID=TCONS_00042475|Name=TCONS_00042475|organism=Clytia hemisphaerica|type=transcript|length=646bp
CCACTAAATATATTTCTCAAactgattttttcttctttcctttAGGACAA
GGTGAGGTCACTTTACCGAGCTAACTTCAAAGATGGAGAAGGCTACGATT
TATCGAAAAGATTTATTCATACCACCAACCTTGAGATAGCTGCATCTATC
ACGCAAGCCATCCTCGAACAAGGAAAATTTACAGACGAGCGAGAGATAAA
AGcatGCTGTCGCAGATATTATGAAacgaaaaagaaagaagaaaagaaac
tgCTAATGGATGATGATGAACggcaaaaaatggaaaaataccaGCGTCGC
TATTCAAGAAGAGACAGGCTTTACAAAAGTCGCAACAAACAAGTCAACAC
ATTAAAGGACCAGATCGGGCCAGATGTCTTTCACTTGTGGACGACGACAG
CATGTCCCGAGCTGATGAGCGACGAGGAGAGTGATGTGGATAACGAAGAG
GTGCTCGTCCGCAGATCGCCACCTTGGAGAGATCCAACTCTTACAAACCT
TATTTGTAACCTGCCAATTAAACGGGGAGGCACAAAAAAACAGAGAATTT
TAGGCCAACCCAGCACTCGCTCCCCACCGGGCCACAAAAGTTAaagtttt
ctctctttttttttcaattgtatTTTtactgtttgtttatttttta Run BLAST on NCBI protein sequence of TCONS_00042475-protein >TCONS_00042475-protein ID=TCONS_00042475-protein|Name=TCONS_00042475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MDDDERQKMEKYQRRYSRRDRLYKSRNKQVNTLKDQIGPDVFHLWTTTAC
PELMSDEESDVDNEEVLVRRSPPWRDPTLTNLICNLPIKRGGTKKQRILG
QPSTRSPPGHKS Run BLAST on NCBI transcript from alignment at sc0003446:8733..10562+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042475 ID=TCONS_00042475|Name=TCONS_00042475|organism=Clytia hemisphaerica|type=transcript|length=1830bp|location=Sequence derived from alignment at sc0003446:8733..10562+ (Clytia hemisphaerica)
CCACTAAATATATTTCTCAAactgattttttcttctttcctttAGGACAA
GGTGAGGTCACTTTACCGAGCTAACTTCAAAGATGGAGAAGGCTACGATT
TATCGAAAAGGTAAACGATTCTTCTACTATATAattgtttatttaatttt
ataCTGGGCACCGTTTTTAATTCCGTTGTTATGGCTgaaaaccccatttt
cttttacaaaaaatttcttcaatgtTGCTAGATCAAGTTTTGGGTTGGAA
ACCAAATTATAGAGATCTNAAACCCcattttcttttacaaaaaatttctt
caatgtTGCTAGATCAAGTTTTGGGTTGGAAACCAAATTATAGAGAATGG
TGTAAGGTGCCTAAAtaatatctggttaaataaacTTAGTTACATTACAT
CCTTAACCGTTTTAAATTGTGTTGCGTTTTTTGTCCCAACTGGTACAATA
TGATTCACGTCGATGCAAATATTAATATTACAAGGTTTAAGTCAAGGTTT
TCAGTCAAACAGACTGAAGGGCTAGATGCTAATGAATTGAATTGACTTTT
AGATTTATTCATACCACCAACCTTGAGATAGCTGCATCTATCACGCAAGC
CATCCTCGAACAAGGAAAATTTACAGACGAGCGAGAGATAAAAGGTATTA
TAGAAAATTAGTTCTTTCCAACGGAAAGCTATCATGTAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaa
ttttaaatttttctaaaaatgtttagGAGACagtaaaattattttactaG
TTTATACGAAAACAAGCAAGCGATTTTAAATTGAATTCCATACTCTCCag
aacaaaaatttaaatcagATCTTcttaagaaataaataaaaatgaagttt
ctATAAAGAATGTCTCCAAGTTGTCTAAACCCTTCATTAACATAACCCTA
TAACACTACTAGTCTCCATAACTCTAACAAACCTGCGATTCGCCTACTTA
CTCCTGTTATGGAAACTTCACTGTAACATCAATGGTTTTTTCATTAATGT
TCGGTATAAAAtgctattttgatatttttttcttcaaaaattaagcTCAA
CAGAGTATTGATTACATTTACATTGTACTATGATTTtcagttaaaaacaa
aatttatttttcagcatGCTGTCGCAGATATTATGAAacgaaaaagaaag
aagaaaagaaactgCTAATGGATGATGATGAACggcaaaaaatggaaaaa
taccaGCGTCGCTATTCAAGAAGAGACAGGGTGAGTTGCCTGACATTCAG
TATTTTGTTGGTTACAAAGAAGCAGtcttaaaatttgattttttacgCCC
AAGGAGAGTTAAAAAGTCACTTTCtattaaaacttttgtttttcattGAT
AGCTTTACAAAAGTCGCAACAAACAAGTCAACACATTAAAGGACCAGATC
GGGCCAGATGTCTTTCACTTGTGGACGACGACAGCATGTCCCGAGCTGAT
GAGCGACGAGGAGAGTGATGTGGATAACGAAGAGGTGCTCGTCCGCAGAT
CGCCACCTTGGAGAGATCCAACTCTTACAAACCTTATTTGTAACCTGCCA
ATTAAACGGGGAGGCACAAAAAAACAGAGAATTTTAGGCCAACCCAGCAC
TCGCTCCCCACCGGGCCACAAAAGTTAaagttttctctctttttttttca
attgtatTTTtactgtttgtttatttttta Coding sequence (CDS) from alignment at sc0003446:8733..10562+ >TCONS_00042475 ID=TCONS_00042475|Name=TCONS_00042475|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0003446:8733..10562+ (Clytia hemisphaerica)
ATGGATGATGATGAACggcaaaaaatggaaaaataccaGCGTCGCTATTC
AAGAAGAGACAGGCTTTACAAAAGTCGCAACAAACAAGTCAACACATTAA
AGGACCAGATCGGGCCAGATGTCTTTCACTTGTGGACGACGACAGCATGT
CCCGAGCTGATGAGCGACGAGGAGAGTGATGTGGATAACGAAGAGGTGCT
CGTCCGCAGATCGCCACCTTGGAGAGATCCAACTCTTACAAACCTTATTT
GTAACCTGCCAATTAAACGGGGAGGCACAAAAAAACAGAGAATTTTAGGC
CAACCCAGCACTCGCTCCCCACCGGGCCACAAAAGTTAaATGGATGATGA
TGAACggcaaaaaatggaaaaataccaGCGTCGCTATTCAAGAAGAGACA
GGCTTTACAAAAGTCGCAACAAACAAGTCAACACATTAAAGGACCAGATC
GGGCCAGATGTCTTTCACTTGTGGACGACGACAGCATGTCCCGAGCTGAT
GAGCGACGAGGAGAGTGATGTGGATAACGAAGAGGTGCTCGTCCGCAGAT
CGCCACCTTGGAGAGATCCAACTCTTACAAACCTTATTTGTAACCTGCCA
ATTAAACGGGGAGGCACAAAAAAACAGAGAATTTTAGGCCAACCCAGCAC
TCGCTCCCCACCGGGCCACAAAAGTTAa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042475-exon-sc0003446-1491911889:8733..8842 | TCONS_00042475-exon-sc0003446-1491911889:8733..8842 | Clytia hemisphaerica | exon |
| TCONS_00042475-exon-sc0003446-1510915933:8733..8842 | TCONS_00042475-exon-sc0003446-1510915933:8733..8842 | Clytia hemisphaerica | exon |
| TCONS_00042475-exon-sc0003446-1575043694:8733..8842 | TCONS_00042475-exon-sc0003446-1575043694:8733..8842 | Clytia hemisphaerica | exon |
| TCONS_00042475-exon-sc0003446-1491911889:9285..9376 | TCONS_00042475-exon-sc0003446-1491911889:9285..9376 | Clytia hemisphaerica | exon |
| TCONS_00042475-exon-sc0003446-1510915933:9285..9376 | TCONS_00042475-exon-sc0003446-1510915933:9285..9376 | Clytia hemisphaerica | exon |
| TCONS_00042475-exon-sc0003446-1575043694:9285..9376 | TCONS_00042475-exon-sc0003446-1575043694:9285..9376 | Clytia hemisphaerica | exon |
| TCONS_00042475-exon-sc0003446-1491911889:9997..10112 | TCONS_00042475-exon-sc0003446-1491911889:9997..10112 | Clytia hemisphaerica | exon |
| TCONS_00042475-exon-sc0003446-1510915933:9997..10112 | TCONS_00042475-exon-sc0003446-1510915933:9997..10112 | Clytia hemisphaerica | exon |
| TCONS_00042475-exon-sc0003446-1575043694:9997..10112 | TCONS_00042475-exon-sc0003446-1575043694:9997..10112 | Clytia hemisphaerica | exon |
| TCONS_00042475-exon-sc0003446-1491911889:10235..10562 | TCONS_00042475-exon-sc0003446-1491911889:10235..10562 | Clytia hemisphaerica | exon |
| TCONS_00042475-exon-sc0003446-1510915933:10235..10562 | TCONS_00042475-exon-sc0003446-1510915933:10235..10562 | Clytia hemisphaerica | exon |
| TCONS_00042475-exon-sc0003446-1575043694:10235..10562 | TCONS_00042475-exon-sc0003446-1575043694:10235..10562 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003446 | supercontig | sc0003446:8733..10562 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028101 | DUF4616 |
Blast
The following BLAST results are available for this feature:
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