TCONS_00042528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042528
Unique NameTCONS_00042528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042528 ID=TCONS_00042528|Name=TCONS_00042528|organism=Clytia hemisphaerica|type=transcript|length=667bp
GGCTGCTAAAGGGTCCAATGCCCGATCCGCTTCGTTCTGATGGccacttt
tgatttctttatttacttacttttacttagccacgtttttttgtttcttg
gaAAACGAGTTGCCGTGTGTTGTGAAAATGGAAACTGAGATTTTCTTCTT
GCAGTTTAAAAtcatttggatttcattttgataTAGAAATTTTTAACAAC
GTGGAAATTCGTGGACATTGGACATTCCATGGGAAAAGGATCACTTTTGC
TCTCAACACTTTATCGATGCAATTAAATTATCGATTCTATCAATACACCT
AATGGTGCATAACATAGGCCTATCGataggggccatccatatagtacgta
cgcagtgaaggggggagagggtGGTTTAGCAAAAGCATACGTCTATTGAC
ACATAAGATGACACACAAAAGACGCAATAAAATCGAATACACTGAAGACA
GTAAGTGATGCAATCCCAAGTGACTAATGACGTAACATGAAattaaaaca
tatcaaaacataGGCCAGCGGCCGTCAcattgctgctttgattggtcagt
catttaatggctatgcaagtttccctccgctgatgcaagttacctgactt
cacggtaATTTCTGGCCTGAATGGATGGAGTAATTCAATATGGGGAACTG
AGTCAATAGGTTGTCAC
Run BLAST on NCBI

transcript from alignment at sc0003475:7473..8139

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042528 ID=TCONS_00042528|Name=TCONS_00042528|organism=Clytia hemisphaerica|type=transcript|length=667bp|location=Sequence derived from alignment at sc0003475:7473..8139 (Clytia hemisphaerica)
GTGACAACCTATTGACTCAGTTCCCCATATTGAATTACTCCATCCATTCA
GGCCAGAAATtaccgtgaagtcaggtaacttgcatcagcggagggaaact
tgcatagccattaaatgactgaccaatcaaagcagcaatgTGACGGCCGC
TGGCCtatgttttgatatgttttaatTTCATGTTACGTCATTAGTCACTT
GGGATTGCATCACTTACTGTCTTCAGTGTATTCGATTTTATTGCGTCTTT
TGTGTGTCATCTTATGTGTCAATAGACGTATGCTTTTGCTAAACCaccct
ctccccccttcactgcgtacgtactatatggatggcccctatCGATAGGC
CTATGTTATGCACCATTAGGTGTATTGATAGAATCGATAATTTAATTGCA
TCGATAAAGTGTTGAGAGCAAAAGTGATCCTTTTCCCATGGAATGTCCAA
TGTCCACGAATTTCCACGTTGTTAAAAATTTCTAtatcaaaatgaaatcc
aaatgaTTTTAAACTGCAAGAAGAAAATCTCAGTTTCCATTTTCACAACA
CACGGCAACTCGTTTtccaagaaacaaaaaaacgtggctaagtaaaagta
agtaaataaagaaatcaaaagtggCCATCAGAACGAAGCGGATCGGGCAT
TGGACCCTTTAGCAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026353XLOC_026353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042528-exon-sc0003475-1491911889:7473..8139TCONS_00042528-exon-sc0003475-1491911889:7473..8139Clytia hemisphaericaexon
TCONS_00042528-exon-sc0003475-1510915933:7473..8139TCONS_00042528-exon-sc0003475-1510915933:7473..8139Clytia hemisphaericaexon
TCONS_00042528-exon-sc0003475-1575043694:7473..8139TCONS_00042528-exon-sc0003475-1575043694:7473..8139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003475supercontigsc0003475:7473..8139 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17471	1.51504	1.51601	1.34193	0	0.342055	0.619961	0.0933203	0.196471	0.162214	0.0786069	0.362014	0.206932	0	0.139929	0.0977339	0.116752	0.298924	0.165681	0.346648	0.384652	0	0.0902903	0.164649	0.0834982	0.0748436	0	0.115571	0.351143	0.266487
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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