TCONS_00042539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042539
Unique NameTCONS_00042539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042539 ID=TCONS_00042539|Name=TCONS_00042539|organism=Clytia hemisphaerica|type=transcript|length=632bp
ttgaaatttcaatggggatagcaattctattgttccaaggtaaaAGGTTC
ATggtgatggttttggagtgcaatttttaaatattaatTTCGAGTTGGga
gaaatcaaagtcaatttcctagtggggctggaattccaggatattttccc
atcgggtctgtgacacaggggtgtattggATTTCCATCAAATAATGGAAT
TTATCGagtagtagaacgtcgaattagtgAGCAACAACTGTAGATATTTT
AAAAAGGGCCCTCTCAGTGGATGCTTTCCAACATATCATATTACTTACTA
AGGCCGACCCTAAAAATCCAGCCGAGTGAAAGTTAATTTTGTCGCCACCC
ggtcacaatttttttcttcgtaactttaaTGAACGTCTCTTAAACCTTAG
TTTATCAACTGGCTTTTTTCGTAAATTTAACTTTTAACATCTCTAAACCT
CAGTTTATCCACTCGCTTTTTTCGTAACTTTAATGAACGTTTCTAAACTT
CAGTTTATccactcgctttcttcgtaaatTTAACTTAACATCTTAATAGT
AGAGCAAAtgcccgcgaatggcatggttgtgagttcgagtctcgccggat
ccgttggttttccaacggttctggtggctggt
Run BLAST on NCBI

transcript from alignment at sc0003481:7061..7692

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042539 ID=TCONS_00042539|Name=TCONS_00042539|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at sc0003481:7061..7692 (Clytia hemisphaerica)
accagccaccagaaccgttggaaaaccaacggatccggcgagactcgaac
tcacaaccatgccattcgcgggcaTTTGCTCTACTATTAAGATGTTAAGT
TAAatttacgaagaaagcgagtggATAAACTGAAGTTTAGAAACGTTCAT
TAAAGTTACGAAAAAAGCGAGTGGATAAACTGAGGTTTAGAGATGTTAAA
AGTTAAATTTACGAAAAAAGCCAGTTGATAAACTAAGGTTTAAGAGACGT
TCAttaaagttacgaagaaaaaaattgtgaccGGGTGGCGACAAAATTAA
CTTTCACTCGGCTGGATTTTTAGGGTCGGCCTTAGTAAGTAATATGATAT
GTTGGAAAGCATCCACTGAGAGGGCCCTTTTTAAAATATCTACAGTTGTT
GCTcactaattcgacgttctactactCGATAAATTCCATTATTTGATGGA
AATccaatacacccctgtgtcacagacccgatgggaaaatatcctggaat
tccagccccactaggaaattgactttgatttctcCCAACTCGAAattaat
atttaaaaattgcactccaaaaccatcaccATGAACCTtttaccttggaa
caatagaattgctatccccattgaaatttcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026362XLOC_026362Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042539-exon-sc0003481-1491911889:7061..7692TCONS_00042539-exon-sc0003481-1491911889:7061..7692Clytia hemisphaericaexon
TCONS_00042539-exon-sc0003481-1510915933:7061..7692TCONS_00042539-exon-sc0003481-1510915933:7061..7692Clytia hemisphaericaexon
TCONS_00042539-exon-sc0003481-1575043694:7061..7692TCONS_00042539-exon-sc0003481-1575043694:7061..7692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003481supercontigsc0003481:7061..7692 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.10377	1.60557	2.37619	2.67985	0.452423	0.715021	0.431321	0.836403	0.565417	1.05373	1.76115	0.6736	0.727651	0.710311	0.818801	1.12881	1.19898	1.23605	1.44615	1.42672	0.490692	0.843173	0.961657	0.963781	0.630346	0.487166	1.05136	0.613681	0.94773	0.483454
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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