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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042549 ID=TCONS_00042549|Name=TCONS_00042549|organism=Clytia hemisphaerica|type=transcript|length=1283bp
NatcttttattcaatttttcaagattGAAAGTTACAATTCCTTATTGCGG
AACGTGCGTTAGAATTTCTCTACTAAATTGCGTTTTATTTCATATGTACT
GCTTTAAAACATTATCTTTACCACTATTATTCCAAAGACCCCTGTTTCAC
AAACCGGTTGGGAAACCCATCCCACTGAAAAATCTAGCCAAAATGTTGGT
CACAATGGGAAAAATACCATACAGTTTCAGCTCCACTGGGAAAGTTTTAT
TATTTCATCCCCATGCAATCTAAGAAAATGCATCTCACtagaatgtttaa
aaaaatagtGGAAAAAACTTCGACTTCGACTTCCACTTCCActggggttg
tgagacaggggtgtttcaaaATCACTATCTCAAGTCTTCTCTTTGAACTT
TTCTTCTTGTTGGTTAAACAGTTTAGTATCCTTTCAGGGGGAGTTTAACA
ATAGTTTTTACAAATTACATATTTTATAGTCTCCTGTGCAAGGTTTACAC
AGGTAAAGAAGTAGTTTTAGTattcttatttttattattatatagTCTGC
TGTGCAAGATTTACACAGTTATAGAAATGGCTTTATTATATAGTCTGCTG
TGCAAGGTTTACACAGTTATAGAAATAGCTTTATTATATAGTCTCCTGTG
CAAGGTTTACACAGTTATAGAAATAGCTTTATTATATAGTCTGCTGTGCA
AGGTTTACACAGTTATAGAAATAGCTTTATTATATAGTCTCCTGTGCAAG
GTTTACACAGGTATGTGTAATATTATATACCTATACATATAGGCAAAAAA
AAAGATCCACAATAATTTCgcataaaactgaaagaaaccTATTTCATTAA
GAGTACTcatgtttttgaactttttgtacAATTCAATACTTTTGAAGCGT
ATATGGATTACAGAGTTTACTTTATGAAGGTAGTGATAGTTCATCGTATA
TTTTTGAATCTCTTATGATTAAACTTACCTAGTTGACGCTATCGAGTATT
GGATGCTTTCATCTGTTGGAAAATCGTATTGGATTCGTAATTCAAACCCG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGAGTATTGGATGCTTTCATCTGTTGGAAAATCGTATT
GGATTCGTAATTCAAACCCGTTAGTAATTAGACACGGCAAAGAAGAGAAA
CAGCGaaacttTCTTCCCATCGTTACGAAAGACTACCGAGAcctagaagt
ttgttttttacgAAGAAATCATCAATATATGCT Run BLAST on NCBI transcript from alignment at sc0003484:1..1975- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042549 ID=TCONS_00042549|Name=TCONS_00042549|organism=Clytia hemisphaerica|type=transcript|length=1975bp|location=Sequence derived from alignment at sc0003484:1..1975- (Clytia hemisphaerica)
NATCTTTTATTCAATTTTTCAAGATTGAAAGTTACAATTCCTTATTGCGG
AACGTGCGTTAGAATTTCTCTACTAAATTGCGTTTTATTTCATATGTACT
GCTTTAAAACATTATCTTTACCACTATTATTCCAAAGACCCCTGTTTCAC
AAACCGGTTGGGAAACCCATCCCACTGAAAAATCTAGCCAAAATGTTGGT
CACAATGGGAAAAATACCATACAGTTTCAGCTCCACTGGGAAAGTTTTAT
TATTTCATCCCCATGCAATCTAAGAAAATGCATCTCACTAGAATGTTTAA
AAAAATAGTGGAAAAAACTTCGACTTCGACTTCCACTTCCACTGGGGTTG
TGAGACAGGGGTGTTTCAAAATCACTATCTCAAGTCTTCTCTTTGAACTT
TTCTTCTTGTTGGTTAAACAGTTTAGTATCCTTTCAGGGGGAGTTTAACA
ATAGTTTTTACAAATTACATATTTTATAGTCTCCTGTGCAAGGTTTACAC
AGGTAAAGAAGTAGTTTTAGTATTCTTATTTTTATTATTATATAGTCTGC
TGTGCAAGATTTACACAGTTATAGAAATGGCTTTATTATATAGTCTGCTG
TGCAAGGTTTACACAGTTATAGAAATAGCTTTATTATATAGTCTCCTGTG
CAAGGTTTACACAGTTATAGAAATAGCTTTATTATATAGTCTGCTGTGCA
AGGTTTACACAGTTATAGAAATAGCTTTATTATATAGTCTCCTGTGCAAG
GTTTACACAGGTATGTGTAATATTATATACCTATACATATAGGCAAAAAA
AAAGATCCACAATAATTTCGCATAAAACTGAAAGAAACCTATTTCATTAA
GAGTACTCATGTTTTTGAACTTTTTGTACAATTCAATACTTTTGAAGCGT
ATATGGATTACAGAGTTTACTTTATGAAGGTAGTGATAGTTCATCGTATA
TTTTTGAATCTCTTATGATTAAACTTACCTAGGTAATAACTTGGATCACT
TTTCCATGATTTTTCATTTAGTGGTGTGATGTAACAATCAAAATGGTGAT
GAGAAAGGACAGTATTGAAAATCGGTCACTATTACACGCTACGAAATTGG
GTCGTATTATTAAATATCTTGAGATGTATAATACTTTCTTTTTAATACAA
TTAAAAGCCTAAAACATGTTTCTTTTATTAGGGTGTTAATGCAAGTATAA
AAATGAAATTCCATAAAAAAAATTTCCTTATGTTGAGATAATATCGATAT
CCAACCGCCTACGCTTCACAACCGTGAAGAAAAACCTCACTGGTTTGATC
CTACTACCTGAAGGTGACTTTCGCGGGAATTAATTTTCGGCAAAAAGAGG
GTGTCTATCGCGAAAGTTAGTTCCGCAAAATACGCCAAATTAGAACCCTC
GCACCGCAACAATTAGTTCCCTTACGGTATTAAAGACTTACCCAATTTAC
ATTTCAGTTGACGCTATCGAGTATTGGATGCTTTCATCTGTTGGAAAATC
GTATTGGATTCGTAATTCAAACCCGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTATTGGATG
CTTTCATCTGTTGGAAAATCGTATTGGATTCGTAATTCAAACCCGTTAGT
AATTAGACACGGCAAAGAAGAGAAACAGCGGTAAGAAACTATTAAATCCG
TTATTTTGGGAATATTAGCACTGGCTTACAAAATTTTGCCCCCACCCCTA
CGAACAAATCCATCTGAAATATTATAATCATTGCTCATTATAATATGAGG
AAATACCAAATGAATCGTTGTCAATCCACTTTTTTTTGTCAGCCGTTTAT
TTTTAAGAACTCATTAGGTTGTTATTTTGTTCTATTTTTTATTTCAGAAA
CTTTCTTCCCATCGTTACGAAAGACTACCGAGACCTAGAAGTTTGTTTTT
TACGAAGAAATCATCAATATATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042549-exon-sc0003484-1575043694:994..1975 | TCONS_00042549-exon-sc0003484-1575043694:994..1975 | Clytia hemisphaerica | exon |
| TCONS_00042549-exon-sc0003484-1575043694:296..518 | TCONS_00042549-exon-sc0003484-1575043694:296..518 | Clytia hemisphaerica | exon |
| TCONS_00042549-exon-sc0003484-1575043694:1..78 | TCONS_00042549-exon-sc0003484-1575043694:1..78 | Clytia hemisphaerica | exon |
| TCONS_00042549-exon-sc0003484-1510915933:994..1975 | TCONS_00042549-exon-sc0003484-1510915933:994..1975 | Clytia hemisphaerica | exon |
| TCONS_00042549-exon-sc0003484-1510915933:296..518 | TCONS_00042549-exon-sc0003484-1510915933:296..518 | Clytia hemisphaerica | exon |
| TCONS_00042549-exon-sc0003484-1510915933:1..78 | TCONS_00042549-exon-sc0003484-1510915933:1..78 | Clytia hemisphaerica | exon |
| TCONS_00042549-exon-sc0003484-1491911889:994..1975 | TCONS_00042549-exon-sc0003484-1491911889:994..1975 | Clytia hemisphaerica | exon |
| TCONS_00042549-exon-sc0003484-1491911889:296..518 | TCONS_00042549-exon-sc0003484-1491911889:296..518 | Clytia hemisphaerica | exon |
| TCONS_00042549-exon-sc0003484-1491911889:1..78 | TCONS_00042549-exon-sc0003484-1491911889:1..78 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003484 | supercontig | sc0003484:1..1975 - |
Blast
The following BLAST results are available for this feature:
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