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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042578 ID=TCONS_00042578|Name=TCONS_00042578|organism=Clytia hemisphaerica|type=transcript|length=504bp
GCGGTACATAATGAAaaatgagcaaaatatttattcttgaaataaacttt
ttgttcaATAACAGTTCAAAATACAACAGAAACATCACCAATATGTAAAT
GGAGTCGAGAATGGGGGAATTGGTCAGATTGTGATTATTTGTACGGTGAT
TGTGGATCAGGTTATCAATATCAGTACCCAGAAAACTGCAAATGTGAAGA
CAAAATAGTTCAGAATAAAACATTGTGTGGATTAACTCCTATTAAAGCAA
GATTTTGTTTCGACGGATGTCAAGGTACATGTCGTGAAATAGGACATGAC
ACCGAAGCTAAAAGATACGAACAGACCACCAGAACCACTACATTTTATAA
TTTGACAATGGATTTTACAAACAGAAACACACATGTATCAATCATTAGAA
TGGAACTATCTATGGAAGTACCATGCACCTACATTGACGTTATCCAGAAA
GGAGTGCTCATAAACCAATACCTTCtcaaagaattcaaaaaatcacaata
tgTA Run BLAST on NCBI transcript from alignment at sc0003505:2691..3943+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042578 ID=TCONS_00042578|Name=TCONS_00042578|organism=Clytia hemisphaerica|type=transcript|length=1253bp|location=Sequence derived from alignment at sc0003505:2691..3943+ (Clytia hemisphaerica)
GCGGTACATAATGAAaaatgagcaaaatatttattcttgaaataaacttt
ttgttcaATAACAGTTCAAAATACAACAGAAACATCACCAATATGTAAAT
GGAGTCGAGAATGGGGGAATTGGTCAGATTGTGATTATTTGTACGGTGAT
TGTGGATCAGGTTATCAATATCAGTACCCAGAAAACTGCAAATGTGAAGA
CAAAATAGTTCAGAATAAAACATTGTGTGGATTAACTCCTATTAAAGCAA
GATTTTGTTTCGACGGATGTCAAGGTAACTAGcacgtttttttttctaca
aaaaggtAAAACTTGGGGTCATCAGTCTTCGAGTCCAAACTTCTTTTCCG
CAAGATGCTTATTTCCAAAGTCTCTTGTACCTGTTGTCCGTTCGTGTCAT
GTTAAGTAGACAACTTCGAAACCAATAAACCTTCTAAGCACTACTTAGTA
TAGGGCAAAATTTCGAGCCATGTCTTCGCCATTATCTTCGGACTATTTCC
GTATatttacgcatgcgtgttacatcACTGCAAAATCATGAATATTTTCC
GAATAAGAAGGGATTGCCTCCTGGCTTTCCAAGATGACGTATATAACAAA
AATATGATTATAGTAATGGAGAGAACAAAAGTGAATCAgatatttttcat
atattttgcATTTCCGAATGTTTATTCTCGCAGAAAGAAACCGTGCAGGC
TGTTTACTTTTGACGACAACTGAGATTTTAGTGCTGGCTTGGTTTTTAGC
CTTTTCATAGGTAAAGAAATTCGCGTTTAATTTCTTTTAAAGCGTTGATG
CGCGAAATTGAAGAATCATTCAAGAGAATTATTTGATTATTCTGGCGCGC
TAATTTTTAGTGTTGCTTAGTTCTTAATCATATCAGGTTTTATTTTGAGG
ATTTAAATAAAAGTGAGGTCTCGTTGTTTCCATTTTAGGTACATGTCGTG
AAATAGGACATGACACCGAAGCTAAAAGATACGAACAGACCACCAGAACC
ACTACATTTTATAATTTGACAATGGATTTTACAAACAGAAACACACATGT
AAGATTTTAATGCTTATTTAAAAATCAGTTGAAAAGTACCACTTTTCGTT
CGTTAGTTTCACCTCATTAAGATTTCCTCGTAGGTATCAATCATTAGAAT
GGAACTATCTATGGAAGTACCATGCACCTACATTGACGTTATCCAGAAAG
GAGTGCTCATAAACCAATACCTTCtcaaagaattcaaaaaatcacaatat
gTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042578-exon-sc0003505-1491911889:2691..2964 | TCONS_00042578-exon-sc0003505-1491911889:2691..2964 | Clytia hemisphaerica | exon |
| TCONS_00042578-exon-sc0003505-1510915933:2691..2964 | TCONS_00042578-exon-sc0003505-1510915933:2691..2964 | Clytia hemisphaerica | exon |
| TCONS_00042578-exon-sc0003505-1575043694:2691..2964 | TCONS_00042578-exon-sc0003505-1575043694:2691..2964 | Clytia hemisphaerica | exon |
| TCONS_00042578-exon-sc0003505-1491911889:3629..3738 | TCONS_00042578-exon-sc0003505-1491911889:3629..3738 | Clytia hemisphaerica | exon |
| TCONS_00042578-exon-sc0003505-1510915933:3629..3738 | TCONS_00042578-exon-sc0003505-1510915933:3629..3738 | Clytia hemisphaerica | exon |
| TCONS_00042578-exon-sc0003505-1575043694:3629..3738 | TCONS_00042578-exon-sc0003505-1575043694:3629..3738 | Clytia hemisphaerica | exon |
| TCONS_00042578-exon-sc0003505-1491911889:3824..3943 | TCONS_00042578-exon-sc0003505-1491911889:3824..3943 | Clytia hemisphaerica | exon |
| TCONS_00042578-exon-sc0003505-1510915933:3824..3943 | TCONS_00042578-exon-sc0003505-1510915933:3824..3943 | Clytia hemisphaerica | exon |
| TCONS_00042578-exon-sc0003505-1575043694:3824..3943 | TCONS_00042578-exon-sc0003505-1575043694:3824..3943 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003505 | supercontig | sc0003505:2691..3943 + |
Blast
The following BLAST results are available for this feature:
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