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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042588 ID=TCONS_00042588|Name=TCONS_00042588|organism=Clytia hemisphaerica|type=transcript|length=1504bp
CTTCGATGTGGACTGAACTTCATTTTCGTCTTGTAAAGATGCATTAATGT
CAATTAAGTTTTCAACTTCGTTGGTCTCACTGCTCTTTGCTGCAAAGTCA
GATTCTTCTTCATCATCGTATGTTGTGTCAAAGTTGGCCTCTTTTCTATC
TTGATGGTCTTCAAATGATACTTTGAGTCCGTCTGGTTCGAGGTTTCTGC
TTTGAAcatcatcttcttctttctttttgtctCCAGAGCGAAGGTAAGGG
GTGTCGGATTGGGAGGAATAACTGGGAGGGGGAGAGCGTAGAGTATATTC
TATTTCAACATCAGAGTCGCCACTGTCACTACAAAGTTCAAGCTCTTCAT
ATTTGACAGGCTCCTCAGGTTCCATTTCATACCAAGGATATGGGGGATCT
GGAAAGTTGGGTTGGGAATtagcctttaaatcgctttcaCTCGACGATTG
ATGGATCATACAGTTGAAAGTGTTCCTTTTAGTCGTATATGCATTGTTGT
TGCCATCTCTTTTCGTGGAATGGTTCTGTTGAGTTTCTTGTTGATTTGTT
GCCGAAGCTGGAGGGCCTTGTGGTCTTGACACAAAACGCCTACCGTCGTT
GAATGGAATTCGTGGGTCCCTTCCACGTCCACCAATATTGTTCTGTTGTC
CTCCATGATTGCCATCTCCTGGATAGTTGTTGCCTTGGTAGTTGTAATGT
CCATAATAATTCGTATTTCCATCGTATCTGTTACTGTAACCACCGTAGCT
ACCTCGACGATTGTTGTTGTCCCTGCCACGACCTCGAGCTTCGCGACAAA
CTCTCGAGGTATGGCCGACACGTTGGCAAGTGTAACATATTGGTTGACCA
TCGGCAGAGCGCATGTATCGACTATTGAATCCAATACTTTTGTCCCTTAG
GGGCCTTCCGTTACCCTGTTCAAGTAAACGAACTTCATTCCGTAATCTGT
TGATTTCTCGGGAAGAATCTGTTGTCGACGCCAAATTTGTTTGACCAAAA
GCATTCAACTGTTGGGGTTGCGCAGCTGTTAGTTGTAATTTTTCCTCCAA
CATCTCTGACATTTTTCTTTCCAATtccttttcgaaattttggttgctat
TCGAAGCCCGGTTCGGTTGAACAGAACACGCTTGTCCACTTGATAATTTT
GCATGtatttcttttatcattttattcGAGTCTTTCGTTGAGGTTGTTAT
TGGGTCTTTCAACGTAACGTAAGGTACCGCCTCCTCAAAGGTTTTGAATT
CTTTGAGTATGACATCTGTGCGAAGGGGTTCATCTAAACCACTGAGCAGG
GCCTCCAACTTTTGTTCGGAGGTCAGGCCCAATTGAAAGGCAATTGTCTC
TAGCTTGAAAATGTAGTCGCCGAGAGAAGTAAAACCAGATCGTTTCAAAG
CTGCCAGTTGAGCTTTTCTGGAGCATCTCGTTTGCATTGATGAGAATCTT
GCAATCATTGCTGCTTTCAACTTTTCATAGGACTTCTTTGTATCGGCAGG
GAGT Run BLAST on NCBI protein sequence of TCONS_00042588-protein >TCONS_00042588-protein ID=TCONS_00042588-protein|Name=TCONS_00042588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp
LPADTKKSYEKLKAAMIARFSSMQTRCSRKAQLAALKRSGFTSLGDYIFK
LETIAFQLGLTSEQKLEALLSGLDEPLRTDVILKEFKTFEEAVPYVTLKD
PITTSTKDSNKMIKEIHAKLSSGQACSVQPNRASNSNQNFEKELERKMSE
MLEEKLQLTAAQPQQLNAFGQTNLASTTDSSREINRLRNEVRLLEQGNGR
PLRDKSIGFNSRYMRSADGQPICYTCQRVGHTSRVCREARGRGRDNNNRR
GSYGGYSNRYDGNTNYYGHYNYQGNNYPGDGNHGGQQNNIGGRGRDPRIP
FNDGRRFVSRPQGPPASATNQQETQQNHSTKRDGNNNAYTTKRNTFNCMI
HQSSSESDLKANSQPNFPDPPYPWYEMEPEEPVKYEELELCSDSGDSDVE
IEYTLRSPPPSYSSQSDTPYLRSGDKKKEEDDVQSRNLEPDGLKVSFEDH
QDRKEANFDTTYDDEEESDFAAKSSETNEVENLIDINASLQDENEVQSTS
K Run BLAST on NCBI transcript from alignment at sc0003513:2719..4222 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042588 ID=TCONS_00042588|Name=TCONS_00042588|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at sc0003513:2719..4222 (Clytia hemisphaerica)
ACTCCCTGCCGATACAAAGAAGTCCTATGAAAAGTTGAAAGCAGCAATGA
TTGCAAGATTCTCATCAATGCAAACGAGATGCTCCAGAAAAGCTCAACTG
GCAGCTTTGAAACGATCTGGTTTTACTTCTCTCGGCGACTACATTTTCAA
GCTAGAGACAATTGCCTTTCAATTGGGCCTGACCTCCGAACAAAAGTTGG
AGGCCCTGCTCAGTGGTTTAGATGAACCCCTTCGCACAGATGTCATACTC
AAAGAATTCAAAACCTTTGAGGAGGCGGTACCTTACGTTACGTTGAAAGA
CCCAATAACAACCTCAACGAAAGACTCgaataaaatgataaaagaaataC
ATGCAAAATTATCAAGTGGACAAGCGTGTTCTGTTCAACCGAACCGGGCT
TCGAatagcaaccaaaatttcgaaaaggaATTGGAAAGAAAAATGTCAGA
GATGTTGGAGGAAAAATTACAACTAACAGCTGCGCAACCCCAACAGTTGA
ATGCTTTTGGTCAAACAAATTTGGCGTCGACAACAGATTCTTCCCGAGAA
ATCAACAGATTACGGAATGAAGTTCGTTTACTTGAACAGGGTAACGGAAG
GCCCCTAAGGGACAAAAGTATTGGATTCAATAGTCGATACATGCGCTCTG
CCGATGGTCAACCAATATGTTACACTTGCCAACGTGTCGGCCATACCTCG
AGAGTTTGTCGCGAAGCTCGAGGTCGTGGCAGGGACAACAACAATCGTCG
AGGTAGCTACGGTGGTTACAGTAACAGATACGATGGAAATACGAATTATT
ATGGACATTACAACTACCAAGGCAACAACTATCCAGGAGATGGCAATCAT
GGAGGACAACAGAACAATATTGGTGGACGTGGAAGGGACCCACGAATTCC
ATTCAACGACGGTAGGCGTTTTGTGTCAAGACCACAAGGCCCTCCAGCTT
CGGCAACAAATCAACAAGAAACTCAACAGAACCATTCCACGAAAAGAGAT
GGCAACAACAATGCATATACGACTAAAAGGAACACTTTCAACTGTATGAT
CCATCAATCGTCGAGtgaaagcgatttaaaggctaATTCCCAACCCAACT
TTCCAGATCCCCCATATCCTTGGTATGAAATGGAACCTGAGGAGCCTGTC
AAATATGAAGAGCTTGAACTTTGTAGTGACAGTGGCGACTCTGATGTTGA
AATAGAATATACTCTACGCTCTCCCCCTCCCAGTTATTCCTCCCAATCCG
ACACCCCTTACCTTCGCTCTGGagacaaaaagaaagaagaagatgatgTT
CAAAGCAGAAACCTCGAACCAGACGGACTCAAAGTATCATTTGAAGACCA
TCAAGATAGAAAAGAGGCCAACTTTGACACAACATACGATGATGAAGAAG
AATCTGACTTTGCAGCAAAGAGCAGTGAGACCAACGAAGTTGAAAACTTA
ATTGACATTAATGCATCTTTACAAGACGAAAATGAAGTTCAGTCCACATC
GAAG Coding sequence (CDS) from alignment at sc0003513:2719..4222 >TCONS_00042588 ID=TCONS_00042588|Name=TCONS_00042588|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at sc0003513:2719..4222 (Clytia hemisphaerica)
CTCCCTGCCGATACAAAGAAGTCCTATGAAAAGTTGAAAGCAGCAATGAT
TGCAAGATTCTCATCAATGCAAACGAGATGCTCCAGAAAAGCTCAACTGG
CAGCTTTGAAACGATCTGGTTTTACTTCTCTCGGCGACTACATTTTCAAG
CTAGAGACAATTGCCTTTCAATTGGGCCTGACCTCCGAACAAAAGTTGGA
GGCCCTGCTCAGTGGTTTAGATGAACCCCTTCGCACAGATGTCATACTCA
AAGAATTCAAAACCTTTGAGGAGGCGGTACCTTACGTTACGTTGAAAGAC
CCAATAACAACCTCAACGAAAGACTCgaataaaatgataaaagaaataCA
TGCAAAATTATCAAGTGGACAAGCGTGTTCTGTTCAACCGAACCGGGCTT
CGAatagcaaccaaaatttcgaaaaggaATTGGAAAGAAAAATGTCAGAG
ATGTTGGAGGAAAAATTACAACTAACAGCTGCGCAACCCCAACAGTTGAA
TGCTTTTGGTCAAACAAATTTGGCGTCGACAACAGATTCTTCCCGAGAAA
TCAACAGATTACGGAATGAAGTTCGTTTACTTGAACAGGGTAACGGAAGG
CCCCTAAGGGACAAAAGTATTGGATTCAATAGTCGATACATGCGCTCTGC
CGATGGTCAACCAATATGTTACACTTGCCAACGTGTCGGCCATACCTCGA
GAGTTTGTCGCGAAGCTCGAGGTCGTGGCAGGGACAACAACAATCGTCGA
GGTAGCTACGGTGGTTACAGTAACAGATACGATGGAAATACGAATTATTA
TGGACATTACAACTACCAAGGCAACAACTATCCAGGAGATGGCAATCATG
GAGGACAACAGAACAATATTGGTGGACGTGGAAGGGACCCACGAATTCCA
TTCAACGACGGTAGGCGTTTTGTGTCAAGACCACAAGGCCCTCCAGCTTC
GGCAACAAATCAACAAGAAACTCAACAGAACCATTCCACGAAAAGAGATG
GCAACAACAATGCATATACGACTAAAAGGAACACTTTCAACTGTATGATC
CATCAATCGTCGAGtgaaagcgatttaaaggctaATTCCCAACCCAACTT
TCCAGATCCCCCATATCCTTGGTATGAAATGGAACCTGAGGAGCCTGTCA
AATATGAAGAGCTTGAACTTTGTAGTGACAGTGGCGACTCTGATGTTGAA
ATAGAATATACTCTACGCTCTCCCCCTCCCAGTTATTCCTCCCAATCCGA
CACCCCTTACCTTCGCTCTGGagacaaaaagaaagaagaagatgatgTTC
AAAGCAGAAACCTCGAACCAGACGGACTCAAAGTATCATTTGAAGACCAT
CAAGATAGAAAAGAGGCCAACTTTGACACAACATACGATGATGAAGAAGA
ATCTGACTTTGCAGCAAAGAGCAGTGAGACCAACGAAGTTGAAAACTTAA
TTGACATTAATGCATCTTTACAAGACGAAAATGAAGTTCAGTCCACATCG
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042588-exon-sc0003513-1491911889:2719..4222 | TCONS_00042588-exon-sc0003513-1491911889:2719..4222 | Clytia hemisphaerica | exon |
| TCONS_00042588-exon-sc0003513-1510915933:2719..4222 | TCONS_00042588-exon-sc0003513-1510915933:2719..4222 | Clytia hemisphaerica | exon |
| TCONS_00042588-exon-sc0003513-1575043694:2719..4222 | TCONS_00042588-exon-sc0003513-1575043694:2719..4222 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003513 | supercontig | sc0003513:2719..4222 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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