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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042659 ID=TCONS_00042659|Name=TCONS_00042659|organism=Clytia hemisphaerica|type=transcript|length=1679bp
AtttgataaaaccttaaaaatttatgtttagCTTTAACTAACTTTTGTGA
CGGAATAAGCAATAAAAAAGTGCTCTTCGCTTgtgtttttcgaaattcag
ggATGAAGGTGTAAGGAAATCGTATTTAGAACTTTAAAATTTGTATATAA
CaatttcaaatgagaaaaacacaaaatctaattttttagAATATCTCATC
CAGTATTGCTCGaggaaaaaatttaaacagaTTTGAAATGATAATTCGCA
ACTTATTGGAAGATTTCATCTCAAAATACTCAAGAATCGTGATTTTAGAC
TGAAAAAAccgtttttgacgaaaattagttttcacgtttttgccaaaagt
gtaaaaaacactgacTTCTACCTTTCTTCCGTTCATCAAAACCTTCAAAC
CTTTCCGGGTAAAACTTTTTCGGGTTTTCCCAATTCTCTGGATTATGATT
TACAGCTTTCAAGTCGACCATCAATGAGCATTTTGGGAAGACTTTGCCAC
CAAGAACAGAGCCTTCTGGGATAGCCCTTTGAAAAGAATTAGCAATAACG
TGGAGCCGtaacgtctctttaatcaccCAATCAAGATACTTCAGAtctct
caaattttcaaatgctTCGAACGAACCATCAAAGCGGTTGATTTCCTCAA
AAAGTTTCTCTTGGCGGTCTCGATTCCGCCCTAAACAATACAAAGCAAAT
GAAAGGGTAGAGGCCGTCGTTTCATACCCTGCAAATATCATTGTCCCAAC
CTCATCTACAATCCCTTGCACGTCAATCTCACCTTTCTCAAAAGAATCTA
ACAACACATCAATAAAAATCTTCTGCTTCTCTACACTATTAACCTCTAAT
CCTTCTTTGCGAAATTTTACTCTATCCTCGATGATGATTTGGACCAAATT
ACGTAATGCATCTCGCTGACTTAATTGCATTTTTCCTTCTGATGATAAAG
CgtatattttttcattccataGCCAGGGTCTTTTAAAGCGATTCATAAAG
TAAACAGAAGCTTTATCAAATATAACCTTGATATTTGGCCCATTGTTTTT
CGTTGTAGAATCTATTGTTAAAGGCACGTGTTTTCTCATAGCAGTGTCAC
AAATAACTGCCATCGTAAACTGCTTTGAAAAGTCAACAATGTCAAATTCA
CGCCCATCTTCAGCGTACTTTTGAAGCAGGTTAACAAATTCAACAGAAAT
TTTCTCAACAGCCGGCATGAAATTACATAAAAGGTCGTAATGAAAAGTTG
GGACCACTAGTCTACGTCTTGTTTTCCATAAATTCCCACTACTACAGGCT
AGTCCGTCACCTATGAGCGTTCTGACAAAGCGATATGAACTTGATTTTGT
ATTATACTTAGGGTTACTCATAAAATCTTCAATGACTTTGATGTTTGATG
TTATAACTAGTTTGTCCGTTAACAAGTATAACCCAAAAGTCCCGTCATAA
TCAATTGCCCATTTGTCACAGAGATTTCGGATCTTCTTCAAATCGATCAG
ATAAGGAATATGCCCAATAAGAGGCCAATGGCCGTCTACAAAGGGCACAG
TGACTTTGTTGTTGCTACGGGTGAAAACATATTTCCACCAAAGAATCAAT
AAGATTGTTGCCGCACCAAGCACAAGTGTAGAAGCCAATACAATATCCAT
AATATTTGTTTCAGCTTTATTAATCTAAA Run BLAST on NCBI transcript from alignment at sc0003580:2757..4505+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042659 ID=TCONS_00042659|Name=TCONS_00042659|organism=Clytia hemisphaerica|type=transcript|length=1749bp|location=Sequence derived from alignment at sc0003580:2757..4505+ (Clytia hemisphaerica)
AtttgataaaaccttaaaaatttatgtttagCTTTAACTAACTTTTGTGA
CGGAATAAGCAATAAAAAAGTGCTCTTCGCTTgtgtttttcgaaattcag
ggATGAAGGTGTAAGGAAATCGTATTTAGAACTTTAAAATTTGTATATAA
CaatttcaaatgagaaaaacacaaaatctaattttttagAATATCTCATC
CAGTATTGCTCGaggaaaaaatttaaacagaTTTGAAATGATAATTCGCA
ACTTATTGGAAGATTTCATCTCAAAATACTCAAGAATCGTGATTTTAGAC
TGAAAAAAccgtttttgacgaaaattagttttcacgtttttgccaaaagt
gtaaaaaacactgacTTCTACCTTTCTTCCGTTCATCAAAACCTTCAAAC
CTTTCCGGGTAAAACTTTTTCGGGTTTTCCCAATTCTCTGGATTATGATT
TACAGCTTTCAAGTCGACCATCAATGAGCATTTTGGGAAGACTTTGCCAC
CAAGAACAGAGCCTTCTGGGATAGCCCTTTGAAAAGAATTAGCAATAACG
TGGAGCCGtaacgtctctttaatcaccCAATCAAGATACTTCAGAtctct
caaattttcaaatgctTCGAACGAACCATCAAAGCGGTTGATTTCCTCAA
AAAGTTTCTCTTGGCGGTCTCGATTCCGCCCTAAACAATACAAAGCAAAT
GAAAGGGTAGAGGCCGTCGTTTCATACCCTGCAAATATCATTGTCCCAAC
CTCATCTACAATCCCTTGCACGTCAATCTCACCTTTCTCAAAAGAATCTA
ACAACACATCAATAAAAATCTTCTGCTTCTCTACACTATTAACCTCTAAT
CCTTCTTTGCGAAATTTTACTCTATCCTCGATGATGATTTGGACCAAATT
ACGTAATGCATCTCGCTGACTTAATTGCATTTTTCCTTCTGATGATAAAG
CgtatattttttcattccataGCCAGGGTCTTTTAAAGCGATTCATAAAG
TAAACAGAAGCTTTATCAAATATAACCTTGATATTTGGCCCATTGTTTTT
CGTTGTAGAATCTATTGTTAAAGGCACGTGTTTTCTCATAGCAGTGTCAC
AAATAACTGCCATCGTAAACTGCTTTGAAAAGTCAACAATGTCAAATTCA
CGCCCATCTTCAGCGTACTTTTGAAGCAGGTTAACAAATTCCACCGAAAT
TTTCTCAACAGCCGGCATGAAATTACATAAAAGGTCGTAATGAAAANAGG
TTAACAAATTCAACAGAAATTTTCTCAACAGCCGGCATGAAATTACATAA
AAGGTCGTAATGAAAAGTTGGGACCACTAGTCTACGTCTTGTTTTCCATA
AATTCCCACTACTACAGGCTAGTCCGTCACCTATGAGCGTTCTGACAAAG
CGATATGAACTTGATTTTGTATTATACTTAGGGTTACTCATAAAATCTTC
AATGACTTTGATGTTTGATGTTATAACTAGTTTGTCCGTTAACAAGTATA
ACCCAAAAGTCCCGTCATAATCAATTGCCCATTTGTCACAGAGATTTCGG
ATCTTCTTCAAATCGATCAGATAAGGAATATGCCCAATAAGAGGCCAATG
GCCGTCTACAAAGGGCACAGTGACTTTGTTGTTGCTACGGGTGAAAACAT
ATTTCCACCAAAGAATCAATAAGATTGTTGCCGCACCAAGCACAAGTGTA
GAAGCCAATACAATATCCATAATATTTGTTTCAGCTTTATTAATCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042659-exon-sc0003580-1491911889:2757..3935 | TCONS_00042659-exon-sc0003580-1491911889:2757..3935 | Clytia hemisphaerica | exon |
| TCONS_00042659-exon-sc0003580-1510915933:2757..3935 | TCONS_00042659-exon-sc0003580-1510915933:2757..3935 | Clytia hemisphaerica | exon |
| TCONS_00042659-exon-sc0003580-1575043694:2757..3935 | TCONS_00042659-exon-sc0003580-1575043694:2757..3935 | Clytia hemisphaerica | exon |
| TCONS_00042659-exon-sc0003580-1491911889:4006..4505 | TCONS_00042659-exon-sc0003580-1491911889:4006..4505 | Clytia hemisphaerica | exon |
| TCONS_00042659-exon-sc0003580-1510915933:4006..4505 | TCONS_00042659-exon-sc0003580-1510915933:4006..4505 | Clytia hemisphaerica | exon |
| TCONS_00042659-exon-sc0003580-1575043694:4006..4505 | TCONS_00042659-exon-sc0003580-1575043694:4006..4505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003580 | supercontig | sc0003580:2757..4505 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00042659 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 6.910e-42 Identity = 116/411 (28.22%), Postives = 210/411 (51.09%), Query Frame = -3
Query: 367 VPFVDGHWPLIGHIPYL-IDLKKIRNLCDKWAIDYDGT--FGLYLLTDKLVITSNIKVIEDFMSNPKYNTKSSSYRFVRTLIGDGLACSSGNLWKTRRRLVVPTFHYDLLCNFMPAVEKISVEFVNLLQKYAEDGREFDIVDFSKQFTMAVICDTAMRKHVPLTIDSTTKNNGPNIKVIFDKASVYFMNRFKRPWLWNEKIYALSSEGKMQLSQRDALRNLVQIIIEDRVK-------FRKEGL-EVNSVEKQKIFIDVLLDSF--EKGEIDVQGIVDEVGTMIFAGYETTASTLSFALYCLGRNRDRQEKLFEEINRFDGSFE---AFENLRDLKYLDWVIKETLRLHVIANSFQRAIPEG-SVLGGKVFPKCSLMVDLKAVNHNPENWENPKKFYPERFEGFDERKKGR 1548
+P V +PL+GH + D ++ ++ +Y L++ +V N + +E +++ K KSS Y+F+ +G GL S+GN W++RR+++ PTFH+ +L +F+ + + + V L+K+ + F+ + + +IC+TAM K+ I + + ++ ++ ++ + + F R K PWLW + Y + EG L +I +R R +G S K++ F+D+LL E + + I +EV T +F G++TTA+ ++++LY LG N + Q+K+ E++ G + E+L+ L+YL+ VIKETLRL F R++ E V G +V ++ A++ +P + NP++F PERF F E +GR
Sbjct: 50 IPTVARAYPLVGHALLMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEKHI-NQEAFNCFFYITLCALDIICETAMGKN----IGAQSNDDSEYVRAVYRMSEMIF-RRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERF--FPENAQGR 452
The following BLAST results are available for this feature:
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