TCONS_00042671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042671
Unique NameTCONS_00042671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042671 ID=TCONS_00042671|Name=TCONS_00042671|organism=Clytia hemisphaerica|type=transcript|length=427bp
aaAATAAGTAAAATGCAATCTAGTTTAAAATTAATGTTTGGTCTGTGAAT
GGTCTTGGAATGGTGATCGAGCAGATGAAAACGAGATCGTAACATCTGAG
TAAAGTTATTCTTAACTtgaacatcatcatcatcaatgaaAAATAGATAA
CCGTTCTTTCCTTTGAAAGATAACAAGAAGCCGAAGCGGAATGAAGACCC
AGCGACATAACAATAGTCGAATGTTTGTTCGCAATGTTACAAAtagccgt
ttcttccaaaatgaactcgGATTGACAAAGCGCTGCTTCTACAAAAACTT
ACAGCACCAAGGACAGCAACATGCTAATAAAAGGCCTGATGCTTGGTCAA
CGAATGAATGTATTCACAAAGCAAATCTATTTCAATTATAACAAGATGGA
GAGAAATTGAGCAGCCAATCAAAATCC
Run BLAST on NCBI

transcript from alignment at sc0003589:7101..7814+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042671 ID=TCONS_00042671|Name=TCONS_00042671|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at sc0003589:7101..7814+ (Clytia hemisphaerica)
aaAATAAGTAAAATGCAATCTAGTTTAAAATTAATGTTTGGTCTGTGAAT
GGTCTTGGAATGGTGATCGAGCAGATGAAAACGAGATCGTAACATCTGAG
TAAAGTTATTCTTAACTtgaacatcatcatcatcaatgaaAAATAGATAA
CCGTTCTTTCCTTTGAAAGATAACAAGAAGCCGAAGCGGAATGAAGACCC
AGCGACATAACAATAGTCGAATGTTTGTTCGCAATGTTACAAAtagccgt
ttcttccaaaatgaactcgGATTGACAAAGCGCTGCTTCTACAAAAACTT
ACAGCACCAAGGACAGCAACATGCTAATAAAAGGCCTGATGCTTGGTCAA
CGAATGAATGTATTCACAAAGCAAATCTATTTCAATTATAACAAGGTACG
CAATTCAATGATTCAATTCGTTCACCCTTCTACATATTCACTTGCCATTG
TAGACTAGAACAAAATGAATCATATGGCAATTTCAGAACGTTATACTGGA
CTTACCGTGTGGTATAGAGTCTAGAGAATCATTTACGCATTACGAATCAT
AGTAATGCTCCATTTTTTTCTGAATCTGTTTTTCGACACTTGATGCAATT
TCCTCGTGTTTCtcgtattggttgatcttcaattttcaatagCTTTGCCA
TGCTTCAGATATGTATTTTTTACCCGTTTCAGATGGAGAGAAATTGAGCA
GCCAATCAAAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026485XLOC_026485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042671-exon-sc0003589-1491911889:7101..7495TCONS_00042671-exon-sc0003589-1491911889:7101..7495Clytia hemisphaericaexon
TCONS_00042671-exon-sc0003589-1510915933:7101..7495TCONS_00042671-exon-sc0003589-1510915933:7101..7495Clytia hemisphaericaexon
TCONS_00042671-exon-sc0003589-1575043694:7101..7495TCONS_00042671-exon-sc0003589-1575043694:7101..7495Clytia hemisphaericaexon
TCONS_00042671-exon-sc0003589-1491911889:7783..7814TCONS_00042671-exon-sc0003589-1491911889:7783..7814Clytia hemisphaericaexon
TCONS_00042671-exon-sc0003589-1510915933:7783..7814TCONS_00042671-exon-sc0003589-1510915933:7783..7814Clytia hemisphaericaexon
TCONS_00042671-exon-sc0003589-1575043694:7783..7814TCONS_00042671-exon-sc0003589-1575043694:7783..7814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003589supercontigsc0003589:7101..7814 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.868952	1.02475	0	0.0354336	0	0	0	0	0.894969	0.68574	0	0.665502	0.375339	0	0.137969	1.50048	0	0.644674	0	0.131142	0	0	2.26898	0.45805	0	0	0.182986	0.394643	1.7051	2.53751
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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