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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042672 ID=TCONS_00042672|Name=TCONS_00042672|organism=Clytia hemisphaerica|type=transcript|length=795bp
aaAATAAGTAAAATGCAATCTAGTTTAAAATTAATGTTTGGTCTGTGAAT
GGTCTTGGAATGGTGATCGAGCAGATGAAAACGAGATCGTAACATCTGAG
TAAAGTTATTCTTAACTtgaacatcatcatcatcaatgaaAAATAGATAA
CCGTTCTTTCCTTTGAAAGATAACAAGAAGCCGAAGCGGAATGAAGACCC
AGCGACATAACAATAGTCGAATGTTTGTTCGCAATGTTACAAAtagccgt
ttcttccaaaatgaactcgGATTGACAAAGCGCTGCTTCTACAAAAACTT
ACAGCACCAAGGACAGCAACATGCTAATAAAAGGCCTGATGCTTGGTCAA
CGAATGAATGTATTCACAAAGCAAATCTATTTCAATTATAACAAGATGGA
GAGAAATTGAGCAGCCAATCAAAATCCGTCCTTATTTACGTTCATTTCAA
CCATCCACTCCGAACAAACTACTATTAATCCGTTCGAGATGGTATAATTC
ATCCATATCAACGTTGTTGAATCCTTGAAACAATAATATTCACTTGTAGC
TATCCACTTCGGTTGTTCGACATCGAATCATTCACGGGGAATCCACGTTG
TTAGATCCTTAAAGCAATATTATTCGACATCCAGTCTATGAAAGCTACCA
TTGCTGCGTCaaagatatcttatataaaacactagatgaaGCATCTCCGT
CCCTAACGAAGCAAAATCTGATAGAAGATTTATTTCGAGTAatatatttt
actttaaaataaattacaaCCGTTTCTGGCTTTCCACATACCTTT Run BLAST on NCBI transcript from alignment at sc0003589:7101..8583+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042672 ID=TCONS_00042672|Name=TCONS_00042672|organism=Clytia hemisphaerica|type=transcript|length=1483bp|location=Sequence derived from alignment at sc0003589:7101..8583+ (Clytia hemisphaerica)
aaAATAAGTAAAATGCAATCTAGTTTAAAATTAATGTTTGGTCTGTGAAT
GGTCTTGGAATGGTGATCGAGCAGATGAAAACGAGATCGTAACATCTGAG
TAAAGTTATTCTTAACTtgaacatcatcatcatcaatgaaAAATAGATAA
CCGTTCTTTCCTTTGAAAGATAACAAGAAGCCGAAGCGGAATGAAGACCC
AGCGACATAACAATAGTCGAATGTTTGTTCGCAATGTTACAAAtagccgt
ttcttccaaaatgaactcgGATTGACAAAGCGCTGCTTCTACAAAAACTT
ACAGCACCAAGGACAGCAACATGCTAATAAAAGGCCTGATGCTTGGTCAA
CGAATGAATGTATTCACAAAGCAAATCTATTTCAATTATAACAAGGTACG
CAATTCAATGATTCAATTCGTTCACCCTTCTACATATTCACTTGCCATTG
TAGACTAGAACAAAATGAATCATATGGCAATTTCAGAACGTTATACTGGA
CTTACCGTGTGGTATAGAGTCTAGAGAATCATTTACGCATTACGAATCAT
AGTAATGCTCCATTTTTTTCTGAATCTGTTTTTCGACACTTGATGCAATT
TCCTCGTGTTTCtcgtattggttgatcttcaattttcaatagCTTTGCCA
TGCTTCAGATATGTATTTTTTACCCGTTTCAGATGGAGAGAAATTGAGCA
GCCAATCAAAATCCGTCCTTATTTACTTTCATTTCAACCATCCACTCCGA
ACAAACTACTATTAAACGGTTCGAGATCTATTTCAATTATAACAAGGTAC
GCAATTCAATGATTCAATTCGTTCACCCTTCTACATATTTACTTGCCATT
GTAGACTAGAACAAAATGAATCATATGGCAATTTCAGAACGTTATACTTG
ACTTACCGTGTGGTATAGAGTCTAGAGAATCATTTACGCATTACGAATCA
TAGTAATGCTCCATTTTTTTCTGAATCTGTTTTTCGACACTTGATGCAAT
TTCCTCGTGTTTCtcgtattggttgatcttcaattttcaatagCTTTGCC
ATGCTTCAGATATGTATTTTTTACCCGTTTCAGATGGAGAGAAATTGAGC
AGCCAATCAAAATCCGTCCTTATTTACGTTCATTTCAACCATCCACTCCG
AACAAACTACTATTAATCCGTTCGAGATGGTATAATTCATCCATATCAAC
GTTGTTGAATCCTTGAAACAATAATATTCACTTGTAGCTATCCACTTCGG
TTGTTCGACATCGAATCATTCACGGGGAATCCACGTTGTTAGATCCTTAA
AGCAATATTATTCGACATCCAGTCTATGAAAGCTACCATTGCTGCGTCaa
agatatcttatataaaacactagatgaaGCATCTCCGTCCCTAACGAAGC
AAAATCTGATAGAAGATTTATTTCGAGTAatatattttactttaaaataa
attacaaCCGTTTCTGGCTTTCCACATACCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042672-exon-sc0003589-1491911889:7101..7495 | TCONS_00042672-exon-sc0003589-1491911889:7101..7495 | Clytia hemisphaerica | exon |
| TCONS_00042672-exon-sc0003589-1510915933:7101..7495 | TCONS_00042672-exon-sc0003589-1510915933:7101..7495 | Clytia hemisphaerica | exon |
| TCONS_00042672-exon-sc0003589-1575043694:7101..7495 | TCONS_00042672-exon-sc0003589-1575043694:7101..7495 | Clytia hemisphaerica | exon |
| TCONS_00042672-exon-sc0003589-1491911889:8184..8583 | TCONS_00042672-exon-sc0003589-1491911889:8184..8583 | Clytia hemisphaerica | exon |
| TCONS_00042672-exon-sc0003589-1510915933:8184..8583 | TCONS_00042672-exon-sc0003589-1510915933:8184..8583 | Clytia hemisphaerica | exon |
| TCONS_00042672-exon-sc0003589-1575043694:8184..8583 | TCONS_00042672-exon-sc0003589-1575043694:8184..8583 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003589 | supercontig | sc0003589:7101..8583 + |
Blast
The following BLAST results are available for this feature:
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