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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042675 ID=TCONS_00042675|Name=TCONS_00042675|organism=Clytia hemisphaerica|type=transcript|length=1027bp
TGAGCCATACCATGACACCGTAATGAATATACACTCCGAACCCTCAACTA
TTaaTGACGAGTCATGCTTTCAATGTGTTTCACACGAGCGTCAAAAATTG
AGGGACAAGGTCGACAAAAATCTCGAAAAGAACCGAGTCATGATGATTAA
TAAACATGCCAAATCAAAGGGCACAAAATTGGCATGTTTTTCGGTAGAAG
AACATGTGTCAATTCAAGCCCCAAAGCGTTTGAGGGGCAGTGGCATAACA
AGACTTCCATGTATTGTGTTAGCTAAATCTGAACAAAATGGCCAGAAAAG
ATACAAACTTATGTGCCAGTATGGCATTCTGAATGGAACATTTACTGCAT
CTGATCTTGCAAAGTTTCCTGGCAATGTAACAGGAAAAGGAGACACCAAA
ATAACATTACATGCAGCTTGTTTGAAGTTCTTTGGAAAGGATCATACATT
CTGCCGATGTACAACAGCTTGCCGAACTAAGATTTGTAAATGTTTCCTCA
ATGACTTACCATGCACTTCTAAATGCCACAAAGGAAACAACGAAAAATGC
CTCAACACCAAATCAACAATAAATTATAATGGAACTCTTCTCCCAAGATA
TGGTGGTCGATATGGCGCAAACAACAGTATCTACAAATTTTGTAACACTT
GTCCACTGGACACAtggttttcaattttaaaatttgtcgACAAAGACACT
TTATCTCAGTGTCTtggggaaaatttcaaaaagattctaGAACGCATCGA
AAACAATGACTTTGACGGCGCAAGAATGATTACAGCCCATATAAATAGTA
TCACACCAGGAATTGATAATTCTGTCAGCTTCTATGAATCAGAATTTCGT
CTATTTATTAGTCCATTTTTGATCGAAAATTTTGATAGTGTGAAGTCTAC
AGAATGTGATGGAGCAAGTTGCCCAAAACGAAACGACATTGTTTACGATC
ACGAATGTCCAGTGGTCATGTCAGGGGAATCAATTCAACAAGCTATGCAA
AATTGGTTTACAAATGAGAGTGTTGGG Run BLAST on NCBI protein sequence of TCONS_00042675-protein >TCONS_00042675-protein ID=TCONS_00042675-protein|Name=TCONS_00042675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
EPYHDTVMNIHSEPSTINDESCFQCVSHERQKLRDKVDKNLEKNRVMMIN
KHAKSKGTKLACFSVEEHVSIQAPKRLRGSGITRLPCIVLAKSEQNGQKR
YKLMCQYGILNGTFTASDLAKFPGNVTGKGDTKITLHAACLKFFGKDHTF
CRCTTACRTKICKCFLNDLPCTSKCHKGNNEKCLNTKSTINYNGTLLPRY
GGRYGANNSIYKFCNTCPLDTWFSILKFVDKDTLSQCLGENFKKILERIE
NNDFDGARMITAHINSITPGIDNSVSFYESEFRLFISPFLIENFDSVKST
ECDGASCPKRNDIVYDHECPVVMSGESIQQAMQNWFTNESVG Run BLAST on NCBI transcript from alignment at sc0003591:4069..5625+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042675 ID=TCONS_00042675|Name=TCONS_00042675|organism=Clytia hemisphaerica|type=transcript|length=1557bp|location=Sequence derived from alignment at sc0003591:4069..5625+ (Clytia hemisphaerica)
TGAGCCATACCATGACACCGTAATGAATATACACTCCGAACCCTCAACTA
TTGTAAGGAAAAGAGCTCGTTTTGTTTCATGCAAAAAAGGCCAAAAGTAC
CCTAAGTGGATTTTAAGCTTCAATTCTAATGCTATACTGTATTAAAAACT
GACAAATATATTGAAGATATTCcttttggctttcagaaaatcaaaacaga
acTGAAAAACCTTAACTTTTTCCAATTTAAATGGCATTTTCGTAAATTGT
ACTTTTTCGCTGGTCAGTGGTAGGTGAAAACTTTATGATGACTTTATCGC
ATGTACGATGACATCACAAACTCCAAATTTTCCCATGAGTTCCAATTTTG
GTAGTGAACATTCCTGCCTAGTTTCAAGTTCATAATCATAAAGATAAAGA
ATTAAGCAGGGTGGTGTAAAACACCCCACTGATaatacaaaactaaaaaa
agccTGATAATGATAGAATTGAAACACTTTGGAGCAGAGAAGAGGTATTT
CTCTCCTTCAAGTGCGTTGTTAATTTTAAAGGATACAACAAAATAACACA
GCatattgaaaattgttttattttttatatagaaTGACGAGTCATGCTTT
CAATGTGTTTCACACGAGCGTCAAAAATTGAGGGACAAGGTCGACAAAAA
TCTCGAAAAGAACCGAGTCATGATGATTAATAAACATGCCAAATCAAAGG
GCACAAAATTGGCATGTTTTTCGGTAGAAGAACATGTGTCAATTCAAGCC
CCAAAGCGTTTGAGGGGCAGTGGCATAACAAGACTTCCATGTATTGTGTT
AGCTAAATCTGAACAAAATGGCCAGAAAAGATACAAACTTATGTGCCAGT
ATGGCATTCTGAATGGAACATTTACTGCATCTGATCTTGCAAAGTTTCCT
GGCAATGTAACAGGAAAAGGAGACACCAAAATAACATTACATGCAGCTTG
TTTGAAGTTCTTTGGAAAGGATCATACATTCTGCCGATGTACAACAGCTT
GCCGAACTAAGATTTGTAAATGTTTCCTCAATGACTTACCATGCACTTCT
AAATGCCACAAAGGAAACAACGAAAAATGCCTCAACACCAAATCAACAAT
AAATTATAATGGAACTCTTCTCCCAAGATATGGTGGTCGATATGGCGCAA
ACAACAGTATCTACAAATTTTGTAACACTTGTCCACTGGACACAtggttt
tcaattttaaaatttgtcgACAAAGACACTTTATCTCAGTGTCTtgggga
aaatttcaaaaagattctaGAACGCATCGAAAACAATGACTTTGACGGCG
CAAGAATGATTACAGCCCATATAAATAGTATCACACCAGGAATTGATAAT
TCTGTCAGCTTCTATGAATCAGAATTTCGTCTATTTATTAGTCCATTTTT
GATCGAAAATTTTGATAGTGTGAAGTCTACAGAATGTGATGGAGCAAGTT
GCCCAAAACGAAACGACATTGTTTACGATCACGAATGTCCAGTGGTCATG
TCAGGGGAATCAATTCAACAAGCTATGCAAAATTGGTTTACAAATGAGAG
TGTTGGG Coding sequence (CDS) from alignment at sc0003591:4069..5625+ >TCONS_00042675 ID=TCONS_00042675|Name=TCONS_00042675|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0003591:4069..5625+ (Clytia hemisphaerica)
GAGCCATACCATGACACCGTAATGAATATACACTCCGAACCCTCAACTAT
TaaTGACGAGTCATGCTTTCAATGTGTTTCACACGAGCGTCAAAAATTGA
GGGACAAGGTCGACAAAAATCTCGAAAAGAACCGAGTCATGATGATTAAT
AAACATGCCAAATCAAAGGGCACAAAATTGGCATGTTTTTCGGTAGAAGA
ACATGTGTCAATTCAAGCCCCAAAGCGTTTGAGGGGCAGTGGCATAACAA
GACTTCCATGTATTGTGTTAGCTAAATCTGAACAAAATGGCCAGAAAAGA
TACAAACTTATGTGCCAGTATGGCATTCTGAATGGAACATTTACTGCATC
TGATCTTGCAAAGTTTCCTGGCAATGTAACAGGAAAAGGAGACACCAAAA
TAACATTACATGCAGCTTGTTTGAAGTTCTTTGGAAAGGATCATACATTC
TGCCGATGTACAACAGCTTGCCGAACTAAGATTTGTAAATGTTTCCTCAA
TGACTTACCATGCACTTCTAAATGCCACAAAGGAAACAACGAAAAATGCC
TCAACACCAAATCAACAATAAATTATAATGGAACTCTTCTCCCAAGATAT
GGTGGTCGATATGGCGCAAACAACAGTATCTACAAATTTTGTAACACTTG
TCCACTGGACACAtggttttcaattttaaaatttgtcgACAAAGACACTT
TATCTCAGTGTCTtggggaaaatttcaaaaagattctaGAACGCATCGAA
AACAATGACTTTGACGGCGCAAGAATGATTACAGCCCATATAAATAGTAT
CACACCAGGAATTGATAATTCTGTCAGCTTCTATGAATCAGAATTTCGTC
TATTTATTAGTCCATTTTTGATCGAAAATTTTGATAGTGTGAAGTCTACA
GAATGTGATGGAGCAAGTTGCCCAAAACGAAACGACATTGTTTACGATCA
CGAATGTCCAGTGGTCATGTCAGGGGAATCAATTCAACAAGCTATGCAAA
ATTGGTTTACAAATGAGAGTGTTGGGGAGCCATACCATGACACCGTAATG
AATATACACTCCGAACCCTCAACTATTaaTGACGAGTCATGCTTTCAATG
TGTTTCACACGAGCGTCAAAAATTGAGGGACAAGGTCGACAAAAATCTCG
AAAAGAACCGAGTCATGATGATTAATAAACATGCCAAATCAAAGGGCACA
AAATTGGCATGTTTTTCGGTAGAAGAACATGTGTCAATTCAAGCCCCAAA
GCGTTTGAGGGGCAGTGGCATAACAAGACTTCCATGTATTGTGTTAGCTA
AATCTGAACAAAATGGCCAGAAAAGATACAAACTTATGTGCCAGTATGGC
ATTCTGAATGGAACATTTACTGCATCTGATCTTGCAAAGTTTCCTGGCAA
TGTAACAGGAAAAGGAGACACCAAAATAACATTACATGCAGCTTGTTTGA
AGTTCTTTGGAAAGGATCATACATTCTGCCGATGTACAACAGCTTGCCGA
ACTAAGATTTGTAAATGTTTCCTCAATGACTTACCATGCACTTCTAAATG
CCACAAAGGAAACAACGAAAAATGCCTCAACACCAAATCAACAATAAATT
ATAATGGAACTCTTCTCCCAAGATATGGTGGTCGATATGGCGCAAACAAC
AGTATCTACAAATTTTGTAACACTTGTCCACTGGACACAtggttttcaat
tttaaaatttgtcgACAAAGACACTTTATCTCAGTGTCTtggggaaaatt
tcaaaaagattctaGAACGCATCGAAAACAATGACTTTGACGGCGCAAGA
ATGATTACAGCCCATATAAATAGTATCACACCAGGAATTGATAATTCTGT
CAGCTTCTATGAATCAGAATTTCGTCTATTTATTAGTCCATTTTTGATCG
AAAATTTTGATAGTGTGAAGTCTACAGAATGTGATGGAGCAAGTTGCCCA
AAACGAAACGACATTGTTTACGATCACGAATGTCCAGTGGTCATGTCAGG
GGAATCAATTCAACAAGCTATGCAAAATTGGTTTACAAATGAGAGTGTTG
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042675-exon-sc0003591-1491911889:4069..4120 | TCONS_00042675-exon-sc0003591-1491911889:4069..4120 | Clytia hemisphaerica | exon |
| TCONS_00042675-exon-sc0003591-1510915933:4069..4120 | TCONS_00042675-exon-sc0003591-1510915933:4069..4120 | Clytia hemisphaerica | exon |
| TCONS_00042675-exon-sc0003591-1575043694:4069..4120 | TCONS_00042675-exon-sc0003591-1575043694:4069..4120 | Clytia hemisphaerica | exon |
| TCONS_00042675-exon-sc0003591-1491911889:4651..5625 | TCONS_00042675-exon-sc0003591-1491911889:4651..5625 | Clytia hemisphaerica | exon |
| TCONS_00042675-exon-sc0003591-1510915933:4651..5625 | TCONS_00042675-exon-sc0003591-1510915933:4651..5625 | Clytia hemisphaerica | exon |
| TCONS_00042675-exon-sc0003591-1575043694:4651..5625 | TCONS_00042675-exon-sc0003591-1575043694:4651..5625 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003591 | supercontig | sc0003591:4069..5625 + |
Blast
The following BLAST results are available for this feature:
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