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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042704 ID=TCONS_00042704|Name=TCONS_00042704|organism=Clytia hemisphaerica|type=transcript|length=1649bp
GgatcatttttcgattttcctttgACAAAATCAAGGTGAAGCAAGGCCTC
CGGAGTGTCTGCACCAATGAGAACTTCAACATCTCCCTTGAGAGGCTGGA
CAATCGATATGTCCTTCNCTCGCCTCCAGTTTCTCGAAAGATAGGAAGTT
TGCGGTTACAGATTTTTCAGAAGATCGTCCTCCAAAGAGTGTCCAACCAA
AGATAGTTTTTACCGCCATTGgatcatttttcgattttcctttgACAAAA
TCAAGGTGAAGCAAGGCCTCCGGAGTGTCTGCACCAATGAGAACTTCAAC
ATCTCCCTTGAGAGGCTGGACAATCGATATGTCCTTCAGATGATCACAAC
GTTTCTTTAAGTTTGGTAAGTTGTAAGGTCGCATTCTTACATTCAGGTTG
TCGACTACCCAGGCATCTTGAATTGGGATGGCTGAATTGAGATTTTGGGA
AGCTGGTGAAATTGTGAAATTGACGGACTTTGATTTGAACGACTGCTTCT
TTGTTAGGACGTTTGAAATCCTCATAGTTTGACTTTTTCCAGACAGATTC
AGTTTTGAAGCGAGACTCGACTTTATCAAAGTTGTATCCGAACCAGTGTC
GAGAAGAGCATtgactttgattgttatttCGCCATTTGAAACAGCAATTG
GAATGACTTGAAGATAAGTATGGACGTTTGATTTTCCATAGTTGGATTCA
ATAACTTCTGGTGTGTCATTTGAATCGACGAAGTTGGGGTCATGTAGTGA
GGAATGATGGCGTTTCTTGCAATGTCGACAGGAAACTTTTGACTTGCATT
CCCGGATAGAGTGTTTTGGTGATAGTAACAGCATCGCTTTTCGTTGGTTA
GCTTCCTTCTATCAGGGATTGTTTTCTTTTGGAACTCGTCGCATTGCCAT
ATCTTGTGTGGTTTTTGGCAAACCCAACAGCTCAATTTCTTGTCGTTGCC
AGAATCAATGTAGTTGTTTTGGCTTTCCTTGTTGCCACCTTTCTTATCTC
TCCTCTTGTTTTCATGAGTTGCAATTATATCTGCTATTGGATTGTAGAAT
TCCTTTAACGTGGCATCTAAGAATTTTTCAAGCTTAAACAGACTTAGATC
AGTGTCATCGAAGTCCTTTGATTTCTTGTAAAAGTTCTTCCTCAGGTTGT
CTGGCAACCTAATGACCGCCTTCGACAAGTTTTCCGTTGAGTGAATGGCG
GAAATGTTGCCAATCCTTTTTAACCAAGTCAAAGTGGATTTTAATTGTTG
GTGGAACCTTTTCAAAGCTGCTCTATCATTTGACACCAGTTGAGGTTTAT
CCAGCAGAAGTTTTAGTTTGGCATGGGTTACCACTGTAGCATTGCCAAAG
TCTCTCTTTAATGACTTCAAAGCGGTGGCGTAGAATATTCCTGATGTCCC
AATGCACTCAACACCTTTTCTTGCTTCTCCTGTGAGGACACTCAGCAGTC
TCTCTATCCGATCATTGTCCGTGAATGACAACTTGAAGTGAACTCTTCGA
CTGAAGTTTTCGATGAATTCAGGCCATTTGGCACTATCTCCATTGAATTT
AGTTAGCTCGATAATTGGTAACGTCTTACTTTCAAACTCATAGCGAAGTG
CTGCGCTAGCAGTGACAGGGTTGGATAGACCAGCAAGACAAGTCTCTTC Run BLAST on NCBI protein sequence of TCONS_00042704-protein >TCONS_00042704-protein ID=TCONS_00042704-protein|Name=TCONS_00042704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
EETCLAGLSNPVTASAALRYEFESKTLPIIELTKFNGDSAKWPEFIENFS
RRVHFKLSFTDNDRIERLLSVLTGEARKGVECIGTSGIFYATALKSLKRD
FGNATVVTHAKLKLLLDKPQLVSNDRAALKRFHQQLKSTLTWLKRIGNIS
AIHSTENLSKAVIRLPDNLRKNFYKKSKDFDDTDLSLFKLEKFLDATLKE
FYNPIADIIATHENKRRDKKGGNKESQNNYIDSGNDKKLSCWVCQKPHKI
WQCDEFQKKTIPDRRKLTNEKRCCYYHQNTLSGNASQKFPVDIARNAIIP
HYMTPTSSIQMTHQKLLNPTMENQTSILIFKSFQLLFQMAK Run BLAST on NCBI transcript from alignment at sc0003615:8763..10411 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042704 ID=TCONS_00042704|Name=TCONS_00042704|organism=Clytia hemisphaerica|type=transcript|length=1649bp|location=Sequence derived from alignment at sc0003615:8763..10411 (Clytia hemisphaerica)
GAAGAGACTTGTCTTGCTGGTCTATCCAACCCTGTCACTGCTAGCGCAGC
ACTTCGCTATGAGTTTGAAAGTAAGACGTTACCAATTATCGAGCTAACTA
AATTCAATGGAGATAGTGCCAAATGGCCTGAATTCATCGAAAACTTCAGT
CGAAGAGTTCACTTCAAGTTGTCATTCACGGACAATGATCGGATAGAGAG
ACTGCTGAGTGTCCTCACAGGAGAAGCAAGAAAAGGTGTTGAGTGCATTG
GGACATCAGGAATATTCTACGCCACCGCTTTGAAGTCATTAAAGAGAGAC
TTTGGCAATGCTACAGTGGTAACCCATGCCAAACTAAAACTTCTGCTGGA
TAAACCTCAACTGGTGTCAAATGATAGAGCAGCTTTGAAAAGGTTCCACC
AACAATTAAAATCCACTTTGACTTGGTTAAAAAGGATTGGCAACATTTCC
GCCATTCACTCAACGGAAAACTTGTCGAAGGCGGTCATTAGGTTGCCAGA
CAACCTGAGGAAGAACTTTTACAAGAAATCAAAGGACTTCGATGACACTG
ATCTAAGTCTGTTTAAGCTTGAAAAATTCTTAGATGCCACGTTAAAGGAA
TTCTACAATCCAATAGCAGATATAATTGCAACTCATGAAAACAAGAGGAG
AGATAAGAAAGGTGGCAACAAGGAAAGCCAAAACAACTACATTGATTCTG
GCAACGACAAGAAATTGAGCTGTTGGGTTTGCCAAAAACCACACAAGATA
TGGCAATGCGACGAGTTCCAAAAGAAAACAATCCCTGATAGAAGGAAGCT
AACCAACGAAAAGCGATGCTGTTACTATCACCAAAACACTCTATCCGGGA
ATGCAAGTCAAAAGTTTCCTGTCGACATTGCAAGAAACGCCATCATTCCT
CACTACATGACCCCAACTTCGTCGATTCAAATGACACACCAGAAGTTATT
GAATCCAACTATGGAAAATCAAACGTCCATACTTATCTTCAAGTCATTCC
AATTGCTGTTTCAAATGGCGaaataacaatcaaagtcaATGCTCTTCTCG
ACACTGGTTCGGATACAACTTTGATAAAGTCGAGTCTCGCTTCAAAACTG
AATCTGTCTGGAAAAAGTCAAACTATGAGGATTTCAAACGTCCTAACAAA
GAAGCAGTCGTTCAAATCAAAGTCCGTCAATTTCACAATTTCACCAGCTT
CCCAAAATCTCAATTCAGCCATCCCAATTCAAGATGCCTGGGTAGTCGAC
AACCTGAATGTAAGAATGCGACCTTACAACTTACCAAACTTAAAGAAACG
TTGTGATCATCTGAAGGACATATCGATTGTCCAGCCTCTCAAGGGAGATG
TTGAAGTTCTCATTGGTGCAGACACTCCGGAGGCCTTGCTTCACCTTGAT
TTTGTcaaaggaaaatcgaaaaatgatcCAATGGCGGTAAAAACTATCTT
TGGTTGGACACTCTTTGGAGGACGATCTTCTGAAAAATCTGTAACCGCAA
ACTTCCTATCTTTCGAGAAACTGGAGGCGAGNGAAGGACATATCGATTGT
CCAGCCTCTCAAGGGAGATGTTGAAGTTCTCATTGGTGCAGACACTCCGG
AGGCCTTGCTTCACCTTGATTTTGTcaaaggaaaatcgaaaaatgatcC Coding sequence (CDS) from alignment at sc0003615:8763..10411 >TCONS_00042704 ID=TCONS_00042704|Name=TCONS_00042704|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0003615:8763..10411 (Clytia hemisphaerica)
GAAGAGACTTGTCTTGCTGGTCTATCCAACCCTGTCACTGCTAGCGCAGC
ACTTCGCTATGAGTTTGAAAGTAAGACGTTACCAATTATCGAGCTAACTA
AATTCAATGGAGATAGTGCCAAATGGCCTGAATTCATCGAAAACTTCAGT
CGAAGAGTTCACTTCAAGTTGTCATTCACGGACAATGATCGGATAGAGAG
ACTGCTGAGTGTCCTCACAGGAGAAGCAAGAAAAGGTGTTGAGTGCATTG
GGACATCAGGAATATTCTACGCCACCGCTTTGAAGTCATTAAAGAGAGAC
TTTGGCAATGCTACAGTGGTAACCCATGCCAAACTAAAACTTCTGCTGGA
TAAACCTCAACTGGTGTCAAATGATAGAGCAGCTTTGAAAAGGTTCCACC
AACAATTAAAATCCACTTTGACTTGGTTAAAAAGGATTGGCAACATTTCC
GCCATTCACTCAACGGAAAACTTGTCGAAGGCGGTCATTAGGTTGCCAGA
CAACCTGAGGAAGAACTTTTACAAGAAATCAAAGGACTTCGATGACACTG
ATCTAAGTCTGTTTAAGCTTGAAAAATTCTTAGATGCCACGTTAAAGGAA
TTCTACAATCCAATAGCAGATATAATTGCAACTCATGAAAACAAGAGGAG
AGATAAGAAAGGTGGCAACAAGGAAAGCCAAAACAACTACATTGATTCTG
GCAACGACAAGAAATTGAGCTGTTGGGTTTGCCAAAAACCACACAAGATA
TGGCAATGCGACGAGTTCCAAAAGAAAACAATCCCTGATAGAAGGAAGCT
AACCAACGAAAAGCGATGCTGTTACTATCACCAAAACACTCTATCCGGGA
ATGCAAGTCAAAAGTTTCCTGTCGACATTGCAAGAAACGCCATCATTCCT
CACTACATGACCCCAACTTCGTCGATTCAAATGACACACCAGAAGTTATT
GAATCCAACTATGGAAAATCAAACGTCCATACTTATCTTCAAGTCATTCC
AATTGCTGTTTCAAATGGCGaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042704-exon-sc0003615-1491911889:8763..10411 | TCONS_00042704-exon-sc0003615-1491911889:8763..10411 | Clytia hemisphaerica | exon |
| TCONS_00042704-exon-sc0003615-1510915933:8763..10411 | TCONS_00042704-exon-sc0003615-1510915933:8763..10411 | Clytia hemisphaerica | exon |
| TCONS_00042704-exon-sc0003615-1575043694:8763..10411 | TCONS_00042704-exon-sc0003615-1575043694:8763..10411 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003615 | supercontig | sc0003615:8763..10411 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005312 | DUF1759 |
Blast
The following BLAST results are available for this feature:
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