TCONS_00042705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042705
Unique NameTCONS_00042705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042705 ID=TCONS_00042705|Name=TCONS_00042705|organism=Clytia hemisphaerica|type=transcript|length=570bp
AGATCCCTGAGGTACACCTGCCAAGACTTCcgtccaatcagaagcttgac
CATCAAGAACAACCCGCTGCCGTCTCCCGTGTAGAAAATTCTGGATTAAT
AAAGGAAGGGAGCCAGAAACaccatatgacttaagtttgaaaattaaacc
ATCGTGCAAAACTCtgtcaaaagctttggaaatatcAAGGAACACTCCAC
GAGTATCTAGGGGTGGATCAACATCAAAACCATTCAGGATGTTGTGTGTN
GTTGTGTGTTATGGATAACAGCTGGGACACACAAGAGTCACCCTTGCGGA
AACCAGACTGGGAATTTGTGAAAAGATTGTTGTTTTCGAAAGAGGTGTAG
ACGGAGTCAAAGatgcatttttcaaagatttttccaaaaataggcagaAG
AGACACTGGTCTATAATTCTTTACCACGCTCTTGTCCCCTTTGTTTTTGT
ACACTTGAACAACATTTGCTCTTTTTCAGTTTGatggaaaaatgcaaaaa
tctaAAGAATATTGATAGATCTTCATAAGAGGTTTAACCAAGGATTCATC
ACAGATTTTAATCATCTGTA
Run BLAST on NCBI

transcript from alignment at sc0003616:2803..3372

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042705 ID=TCONS_00042705|Name=TCONS_00042705|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at sc0003616:2803..3372 (Clytia hemisphaerica)
TACAGATGATTAAAATCTGTGATGAATCCTTGGTTAAACCTCTTATGAAG
ATCTATCAATATTCTTtagatttttgcatttttccatCAAACTGAAAAAG
AGCAAATGTTGTTCAAGTGTACAAAAACAAAGGGGACAAGAGCGTGGTAA
AGAATTATAGACCAGTGTCTCTtctgcctatttttggaaaaatctttgaa
aaatgcatCTTTGACTCCGTCTACACCTCTTTCGAAAACAACAATCTTTT
CACAAATTCCCAGTCTGGTTTCCGCAAGGGTGACTCTTGTGTGTCCCAGC
TGTTATCCATAACACACAACNACACACAACATCCTGAATGGTTTTGATGT
TGATCCACCCCTAGATACTCGTGGAGTGTTCCTTgatatttccaaagctt
ttgacaGAGTTTTGCACGATggtttaattttcaaacttaagtcatatggt
GTTTCTGGCTCCCTTCCTTTATTAATCCAGAATTTTCTACACGGGAGACG
GCAGCGGGTTGTTCTTGATGgtcaagcttctgattggacgGAAGTCTTGG
CAGGTGTACCTCAGGGATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026515XLOC_026515Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042705-exon-sc0003616-1491911889:2803..3372TCONS_00042705-exon-sc0003616-1491911889:2803..3372Clytia hemisphaericaexon
TCONS_00042705-exon-sc0003616-1510915933:2803..3372TCONS_00042705-exon-sc0003616-1510915933:2803..3372Clytia hemisphaericaexon
TCONS_00042705-exon-sc0003616-1575043694:2803..3372TCONS_00042705-exon-sc0003616-1575043694:2803..3372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003616supercontigsc0003616:2803..3372 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.893842	1.11883	1.60712	0.738445	0.60185	1.18109	0.824659	0.916023	1.10563	1.28477	0.925442	1.70637	0.510227	1.65142	0.553748	1.05171	1.17881	0.795144	0.856113	1.26653	0.928796	1.09899	0	0.921884	1.37169	0.90223	2.05249	0.823821	1.11431	0.759673
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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