TCONS_00042707 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00042707
Unique Name	TCONS_00042707
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	919

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0003617:2127..6632+

transcript sequence

>TCONS_00042707 ID=TCONS_00042707|Name=TCONS_00042707|organism=Clytia hemisphaerica|type=transcript|length=919bp
AGTACATATACGCCTTCTGATTGTCGCACTTTTAGCATGTCATCTTATGA
GAAGGATGTTGTATGTGGAGAGGGAAAGTCAAATTGAAAAGGTtatgatt
ttctaattttacaAATTTGGAATTTAGTCAAATGAACTTTAAGTTTATTC
CAATCACATTTTATATTCGTGACATGGCACATTTTACAGCACATATTCTT
AGGCCAGCTGaatTACCAAAGGAATTACCAAAACCATACGACAATGATTA
ACCTTGAACAACAGTCCACCACTTCCCTGATGAGGATTTAGAATATCAAC
ATCGAACTAGTTAATGAAGAAGATGAGCACAAAATTCAtTTGACTTCCAA
GAAAGATGACAAGTTAGGAGCATTTGCTGATATCTGTTTATGACGTTTAT
TAATCACTGGGTATAAAAGTTGTGTTCAAGCTGTTGTTTATATTACCAAA
TATATGGCAACTTATTAGCTGGAAGTCCAAGAAAACAGCAACTACCAATT
GGTCAACTGTGCTTAATCATCAACCGCTAGAATTAAATTATGTTAAAGGC
TATTCCTAGCTACCATTAACTACAAATTGTGAAGTAAGTTTTCAGGTTTG
CCAGCGATGAAATGCTGAGGAGAGGTTTTCTTTGGAATTCAAGTAGCGCA
AGTACGACATCATATTCTAGGATCCAGAAATTACTTATAATTAAAGACAA
TTAAAGACATGAAACAAGAAGGATATCACAAAAATAGACCAACCCGgtac
ataatttttttcatattttgatgttttgataaGCTCAGGAAATATTTTCC
ATAAAGATTATTTCACACTCCAAAAAGACATTAGCTTAATTTTCTTCATC
AAACTGACCCTTCACCCGTTTTCGTCGGTAGACATAttagtacacccctg
tctcacagcacCAGTGGAA

Run BLAST on NCBI

transcript from alignment at sc0003617:2127..6632+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00042707 ID=TCONS_00042707|Name=TCONS_00042707|organism=Clytia hemisphaerica|type=transcript|length=4506bp|location=Sequence derived from alignment at sc0003617:2127..6632+ (Clytia hemisphaerica)
AGTACATATACGCCTTCTGATTGTCGCACTTTTAGCATGTCATCTTATGA
GAAGGATGTTGTATGTGGAGAGGGAAAGTCAAATTGAAAAGGTtatgatt
ttctaattttacaAATTTGGAATTTAGTCAAATGAACTTTAAGTTTATTC
CAATCACATTTTATATTCGTGACATGGCACATTTTACAGCACATATTCTT
AGGCCAGCTGGTGagttttggctttttttgtttttctgtgttttgtttTA
GGTTTTTGGCTCTTAGTGTCTCTTTCTAAGTCAAGACAGGTGTAGCCTCT
TCTCAAAGACCATATAGAaattttttagccagtgggggtaaaaataattc
GATAGGGAATTGTTACTTTTTTACGGTTTGGGATTTGCACTGTTTTCAAG
TCAGTGGGGTTGAGAAAGTAGCACATATAGCCTGGAAATCCAAGCGTTGA
ACTTTTTCATTgtctagtgttttatattttACGTAATTTCAGAACTTTAC
AAATTGaggtaagaaaattttatttttctaaaatttaaagcttggatatc
caggatAGCAcatatttttgaagatttacTTGTTCTCAACTTcggttgag
ctagaatctgataATGTCTGTTTGTGCTGTGGGGCAGGCTGAAGTCTTCA
AAAAAAGTCcgattttggctgaaattttgcacatttgTGTCGACttgatt
gaaattttgcacATTTGTTTCTTGGTGAATATCTGGGtgtgttttgtttc
atttttagaaaacattgTTTTAGGGGCGTGGTCatgactttttttaaact
ttgaggcAGGCAGGAGACCTcaaaaaacaaagtttgaaagaaaagttatc
ttatatcaaaaattgtattttaatgtTTACAATTCGGTCTACAAGTAATT
TAaaaaatactgaagttgagtCAGTATGCGGTTAGCACTATTAGCATTAT
TACattttgtctgtacacagacccagtatatacggctgattttaaaatac
attTTACTTCGAAgtgataaacgtgagatacacactctggtacagagtat
atTACATTCAGcgggtcaaaatttgaagtataattttttaaCTGGGGATG
ACAGTTTGGCCAACTTTTCCAGTGGGAGGGGATCCCACCGGGTctttgtg
agaaggggtgttaggattttcattcaatttgtaaTTAGTATTTACCTAAA
ACTGGAATCAGGCTTTCTGTTGTGATAACACATTTGTAGGGTTTCATAGT
GTTGCTTGCAACATAACGGACACACATTTGACCCTCTAATATACAGCttt
cagttaaaaaaatttaaagttagTTGGTGATTTTGTGAAAACTAAGTCTT
TTTCGAGAAATTCGGtcaatctggtctgtaaaatacacattagtCATGTA
ATTAACTCAAAAATTTTCCTGAATAATATATTTGATATATTTACTTCACT
CCTGCAAATTTTCATGACACCTTATATATTTGTTGAAATATGACCGTTTT
TTCAGGCCATAACCccttttaaaaaattaattttgaatatcCAACTGTTT
TTACTTGGGGCTTCATAGATCTTGGTACTGACACTTACCATCATTTTTCT
GACTCTTCTATACCCAACCTTTCGagtggtacacgtttttttatataaga
acaaactatataagaacataaggcttcaatggccaaaatattaagaacaa
gttaaacaCATTTTATGGCTTTGAGGACCCTataacacccaatttcttaa
taAATTAGACAAGAACACcctcaaaatggtgaaaataagaacattttaag
aacatttttatggcttgaaactcaaaaagttaagaacatccgaaggcttc
caaAAAttggaatgttcttataaaaaaagtgtataaatCACTATTACTCC
ATTTTTTATATACCCATTTGGCCCTTATCTCATAGACTAATTAATCAATT
CATAAAGATGAATTTCACAGGGATGATTTActttaatacacccctgtctc
acagacccggtggaactttttcccacagtggggataaagatttctatcga
aatcacaacaggggatagaaattatattgttttaaGTTTAAATTATCCAG
TTATTGAGATGGTTTGGGAGCGTACTTTTAACATTGAATATCTaatggga
atgaaatcaaagtcaacaTCCCACCAGGAACGAAAATTGTAGGGTCTTTA
TCCAACCGGGGACGAATTTTTGGCTTATTCCTTTGGCTCGTCGCCAAGGG
TCGGTGATAGACGggtgttttaatttttttaatttcttttgttttagaat
TACCAAAGGAATTACCAAAACCATACGACAATGATTAACCTTGAACAACA
GTCCACCACTTCCCTGATGAGGATTTAGAATATCAACATCGAACTAGTTA
ATGAAGAAGATGAGCACAAAATTCAGTAAATTATTACTTTCATCATTGAA
ATTGCACTATGATATCCCTTTTTTCTTCGAGATAACCAAGGCAAGGCAAA
AGGTTTTTGAGCAGTGTTCACGCAAAACTTTAGTTATTTACTATGAAACA
CTAAAGAAAAGTTGTGGGTTCCAAGGTACATAAAGACCAGTTAAAAATGT
TGacacttttcctttttctttcttcagtTTGACTTCCAAGAAAGATGACA
AGTTAGGAGCATTTGCTGATATCTGTTTATGACGTTTATTAATCACTGGG
TATAAAAGTTGTGTTCAAGCTGTTGTTTATATTACCAAATATATGGCAAC
TTATTAGGTGAGTTTAAATCATTACACATGGATAAGCGACTCATTGCATT
ATCCTAAATCTTAAGACATCTTCAGAACTTTTCAATGCACTGTTGATATT
GAAATGCTAAGACAAAAGGTTAGTCAATAAAGCAAATGAACACCTTACCA
TGTCACAGAACCacaatcagcgccgaaatatatCGGCCATTCTGGGTATT
ATAACGTTTTGCTGAAGTTAAAGGTTGcgcgagaattgcagtttcagtac
ttccactttgcttcattggatttttcgatttgggaggggttaagtggctt
ccaggctatattctcagcctaaaatttaaattttttgttattaGCTGGAA
GTCCAAGAAAACAGCAACTACCAATTGGTCAACTGTGCTTAATCATCAAC
CGCTAGAATTAAATTATGTTAAAGGCTATTCCTAGCTACCATTAACTACA
AATTGTGAAGTAAGTTTTCAGGTAACAGTCATTATCATTCTGCTCAAAGG
CAACTCTAGACTAGAGtttacttctgactgaactttgctttctgatgatt
ttgatggcacAGAGTcggtgaagtagactagaggatttcgccttcttgaa
ttttttccctctcgttttcaaaaattatatgaaaacatcaaaacaataaa
atgtttctaaaattccataaaagtttataaaattataataaaaacaagaa
aatatctccaaaatttgaaagaaattggtTCATTAGTCAtggttttgtgt
ttgtttttctacaaaaagggactggatctagtggtacggatttgctacca
cctcaagcaaagccaaaaaatggaGCCCGTCAAATTACAcagggccactt
atcagcgccatccagtctatcagaAAGCTATAAGTGGTCCCTGGACTGTA
AGACAACTCTCTCTGGGGGAGatgtactaggtttgcgaggggacgggttt
atttgaaaatcgaccctttgagagactaaaATTTTTGTTCGATCCTTTAA
GAGACTATTTCTCCAATACTTAGCTCAATATCAAGATTTGATGAACCTTT
GAGGAAgtcgatttttgatattttctaattttggaAAACTCAATTGCAAA
TTTATCGTTTTTTGTGCCCCTTTAAGAGACTTTCGAGGGGTTAAAAAAGG
GATCCTCATGGCCCCACATACCCGACGCCCATTTCACCCATAGTATCACC
TCTCTCCCGGGCTCTGGCTTCACACATCAGAAGTGGAGTCGTTTAGGAAT
TTAAGTCTGATCATTCAAGTTTAATTTCATAGAATTTTTCACCCGTTAAA
AGAGGAGAAATCGTCGAAAGAAATTCCATTTCATTTTATCATTAACTATT
TCTTTTCCTTCCTAGTGTAGGTTAAGTCACTGTGATTTCTGTTCAGAGTC
TGGTTATTCTATATTGCCTTATGTCTTTTCAGGTTTGCCAGCGATGAAAT
GCTGAGGAGAGGTTTTCTTTGGAATTCAAGTAGCGCAAGTACGACATCAT
ATTCTAGGATCCAGAAATTACTTATAATTAAAGACAATTAAAGACATGAA
ACAAGAAGGATATCACAAAAATAGACCAACCCGgtacataatttttttca
tattttgatgttttgataaGCTCAGGAAATATTTTCCATAAAGATTATTT
CACACTCCAAAAAGACATTAGCTTAATTTTCTTCATCAAACTGACCCTTC
ACCCGTTTTCGTCGGTAGACATAttagtacacccctgtctcacagcacCA
GTGGAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_026517	XLOC_026517	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0003617	supercontig	sc0003617:2127..6632 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.48675	15.3572	1.6565	2.34609	0.491312	0	9.83458e-10	1.35129	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.78095	1.64074	0	0	0	1.38684	3.97026	0.0942999

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00042707 vs. Swiss-Prot (Human)

BLAST of TCONS_00042707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00042707 (transcript) - C. hemisphaerica