TCONS_00042710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042710
Unique NameTCONS_00042710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042710 ID=TCONS_00042710|Name=TCONS_00042710|organism=Clytia hemisphaerica|type=transcript|length=764bp
CGCACTTTTAGCATGTCATCTTATGAGAAGGATGTTGTATGTGGAGAGGG
AAAGTCAAATTGAAAAGaatTACCAAAGGAATTACCAAAACCATACGACA
ATGATTAACCTTGAACAACAGTCCACCACTTCCCTGATGAGGATTTAGAA
TATCAACATCGAACTAGTTAATGAAGAAGATGAGCACAAAATTCAtTTGA
CTTCCAAGAAAGATGACAAGTTAGGAGCATTTGCTGATATCTGTTTATGA
CGTTTATTAATCACTGGGTATAAAAGTTGTGTTCAAGCTGTTGTTTATAT
TACCAAATATATGGCAACTTATTAGCTGGAAGTCCAAGAAAACAGCAACT
ACCAATTGGTCAACTGTGCTTAATCATCAACCGCTAGAATTAAATTATGT
TAAAGGCTATTCCTAGCTACCATTAACTACAAATTGTGAAGTTTGCCAGC
GATGAAATGCTGAGGAGAGGTTTTCTTTGGAATTCAAGTAGCGCAAGTAC
GACATCATATTCTAGGATCCAGAAATTACTTATAATTAAAGACAATTAAA
GACATGAAACAAGAAGGATATCACAAAAATAGACCAACCCGgtacataat
ttttttcatattttgatgttttgataaGCTCAGGAAATATTTTCCATAAA
GATTATTTCACACTCCAAAAAGACATTAGCTTAATTTTCTTCATCAAACT
GACCCTTCACCCGTTTTCGTCGGTAGACATAttagtacacccctgtctca
cagcacCAGTGGAA
Run BLAST on NCBI

transcript from alignment at sc0003617:2151..6632+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042710 ID=TCONS_00042710|Name=TCONS_00042710|organism=Clytia hemisphaerica|type=transcript|length=4482bp|location=Sequence derived from alignment at sc0003617:2151..6632+ (Clytia hemisphaerica)
CGCACTTTTAGCATGTCATCTTATGAGAAGGATGTTGTATGTGGAGAGGG
AAAGTCAAATTGAAAAGGTtatgattttctaattttacaAATTTGGAATT
TAGTCAAATGAACTTTAAGTTTATTCCAATCACATTTTATATTCGTGACA
TGGCACATTTTACAGCACATATTCTTAGGCCAGCTGGTGagttttggctt
tttttgtttttctgtgttttgtttTAGGTTTTTGGCTCTTAGTGTCTCTT
TCTAAGTCAAGACAGGTGTAGCCTCTTCTCAAAGACCATATAGAaatttt
ttagccagtgggggtaaaaataattcGATAGGGAATTGTTACTTTTTTAC
GGTTTGGGATTTGCACTGTTTTCAAGTCAGTGGGGTTGAGAAAGTAGCAC
ATATAGCCTGGAAATCCAAGCGTTGAACTTTTTCATTgtctagtgtttta
tattttACGTAATTTCAGAACTTTACAAATTGaggtaagaaaattttatt
tttctaaaatttaaagcttggatatccaggatAGCAcatatttttgaaga
tttacTTGTTCTCAACTTcggttgagctagaatctgataATGTCTGTTTG
TGCTGTGGGGCAGGCTGAAGTCTTCAAAAAAAGTCcgattttggctgaaa
ttttgcacatttgTGTCGACttgattgaaattttgcacATTTGTTTCTTG
GTGAATATCTGGGtgtgttttgtttcatttttagaaaacattgTTTTAGG
GGCGTGGTCatgactttttttaaactttgaggcAGGCAGGAGACCTcaaa
aaacaaagtttgaaagaaaagttatcttatatcaaaaattgtattttaat
gtTTACAATTCGGTCTACAAGTAATTTAaaaaatactgaagttgagtCAG
TATGCGGTTAGCACTATTAGCATTATTACattttgtctgtacacagaccc
agtatatacggctgattttaaaatacattTTACTTCGAAgtgataaacgt
gagatacacactctggtacagagtatatTACATTCAGcgggtcaaaattt
gaagtataattttttaaCTGGGGATGACAGTTTGGCCAACTTTTCCAGTG
GGAGGGGATCCCACCGGGTctttgtgagaaggggtgttaggattttcatt
caatttgtaaTTAGTATTTACCTAAAACTGGAATCAGGCTTTCTGTTGTG
ATAACACATTTGTAGGGTTTCATAGTGTTGCTTGCAACATAACGGACACA
CATTTGACCCTCTAATATACAGCtttcagttaaaaaaatttaaagttagT
TGGTGATTTTGTGAAAACTAAGTCTTTTTCGAGAAATTCGGtcaatctgg
tctgtaaaatacacattagtCATGTAATTAACTCAAAAATTTTCCTGAAT
AATATATTTGATATATTTACTTCACTCCTGCAAATTTTCATGACACCTTA
TATATTTGTTGAAATATGACCGTTTTTTCAGGCCATAACCccttttaaaa
aattaattttgaatatcCAACTGTTTTTACTTGGGGCTTCATAGATCTTG
GTACTGACACTTACCATCATTTTTCTGACTCTTCTATACCCAACCTTTCG
agtggtacacgtttttttatataagaacaaactatataagaacataaggc
ttcaatggccaaaatattaagaacaagttaaacaCATTTTATGGCTTTGA
GGACCCTataacacccaatttcttaataAATTAGACAAGAACACcctcaa
aatggtgaaaataagaacattttaagaacatttttatggcttgaaactca
aaaagttaagaacatccgaaggcttccaaAAAttggaatgttcttataaa
aaaagtgtataaatCACTATTACTCCATTTTTTATATACCCATTTGGCCC
TTATCTCATAGACTAATTAATCAATTCATAAAGATGAATTTCACAGGGAT
GATTTActttaatacacccctgtctcacagacccggtggaactttttccc
acagtggggataaagatttctatcgaaatcacaacaggggatagaaatta
tattgttttaaGTTTAAATTATCCAGTTATTGAGATGGTTTGGGAGCGTA
CTTTTAACATTGAATATCTaatgggaatgaaatcaaagtcaacaTCCCAC
CAGGAACGAAAATTGTAGGGTCTTTATCCAACCGGGGACGAATTTTTGGC
TTATTCCTTTGGCTCGTCGCCAAGGGTCGGTGATAGACGggtgttttaat
ttttttaatttcttttgttttagaatTACCAAAGGAATTACCAAAACCAT
ACGACAATGATTAACCTTGAACAACAGTCCACCACTTCCCTGATGAGGAT
TTAGAATATCAACATCGAACTAGTTAATGAAGAAGATGAGCACAAAATTC
AGTAAATTATTACTTTCATCATTGAAATTGCACTATGATATCCCTTTTTT
CTTCGAGATAACCAAGGCAAGGCAAAAGGTTTTTGAGCAGTGTTCACGCA
AAACTTTAGTTATTTACTATGAAACACTAAAGAAAAGTTGTGGGTTCCAA
GGTACATAAAGACCAGTTAAAAATGTTGacacttttcctttttctttctt
cagtTTGACTTCCAAGAAAGATGACAAGTTAGGAGCATTTGCTGATATCT
GTTTATGACGTTTATTAATCACTGGGTATAAAAGTTGTGTTCAAGCTGTT
GTTTATATTACCAAATATATGGCAACTTATTAGGTGAGTTTAAATCATTA
CACATGGATAAGCGACTCATTGCATTATCCTAAATCTTAAGACATCTTCA
GAACTTTTCAATGCACTGTTGATATTGAAATGCTAAGACAAAAGGTTAGT
CAATAAAGCAAATGAACACCTTACCATGTCACAGAACCacaatcagcgcc
gaaatatatCGGCCATTCTGGGTATTATAACGTTTTGCTGAAGTTAAAGG
TTGcgcgagaattgcagtttcagtacttccactttgcttcattggatttt
tcgatttgggaggggttaagtggcttccaggctatattctcagcctaaaa
tttaaattttttgttattaGCTGGAAGTCCAAGAAAACAGCAACTACCAA
TTGGTCAACTGTGCTTAATCATCAACCGCTAGAATTAAATTATGTTAAAG
GCTATTCCTAGCTACCATTAACTACAAATTGTGAAGTAAGTTTTCAGGTA
ACAGTCATTATCATTCTGCTCAAAGGCAACTCTAGACTAGAGtttacttc
tgactgaactttgctttctgatgattttgatggcacAGAGTcggtgaagt
agactagaggatttcgccttcttgaattttttccctctcgttttcaaaaa
ttatatgaaaacatcaaaacaataaaatgtttctaaaattccataaaagt
ttataaaattataataaaaacaagaaaatatctccaaaatttgaaagaaa
ttggtTCATTAGTCAtggttttgtgtttgtttttctacaaaaagggactg
gatctagtggtacggatttgctaccacctcaagcaaagccaaaaaatgga
GCCCGTCAAATTACAcagggccacttatcagcgccatccagtctatcaga
AAGCTATAAGTGGTCCCTGGACTGTAAGACAACTCTCTCTGGGGGAGatg
tactaggtttgcgaggggacgggtttatttgaaaatcgaccctttgagag
actaaaATTTTTGTTCGATCCTTTAAGAGACTATTTCTCCAATACTTAGC
TCAATATCAAGATTTGATGAACCTTTGAGGAAgtcgatttttgatatttt
ctaattttggaAAACTCAATTGCAAATTTATCGTTTTTTGTGCCCCTTTA
AGAGACTTTCGAGGGGTTAAAAAAGGGATCCTCATGGCCCCACATACCCG
ACGCCCATTTCACCCATAGTATCACCTCTCTCCCGGGCTCTGGCTTCACA
CATCAGAAGTGGAGTCGTTTAGGAATTTAAGTCTGATCATTCAAGTTTAA
TTTCATAGAATTTTTCACCCGTTAAAAGAGGAGAAATCGTCGAAAGAAAT
TCCATTTCATTTTATCATTAACTATTTCTTTTCCTTCCTAGTGTAGGTTA
AGTCACTGTGATTTCTGTTCAGAGTCTGGTTATTCTATATTGCCTTATGT
CTTTTCAGGTTTGCCAGCGATGAAATGCTGAGGAGAGGTTTTCTTTGGAA
TTCAAGTAGCGCAAGTACGACATCATATTCTAGGATCCAGAAATTACTTA
TAATTAAAGACAATTAAAGACATGAAACAAGAAGGATATCACAAAAATAG
ACCAACCCGgtacataatttttttcatattttgatgttttgataaGCTCA
GGAAATATTTTCCATAAAGATTATTTCACACTCCAAAAAGACATTAGCTT
AATTTTCTTCATCAAACTGACCCTTCACCCGTTTTCGTCGGTAGACATAt
tagtacacccctgtctcacagcacCAGTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026517XLOC_026517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042710-exon-sc0003617-1491911889:2151..2217TCONS_00042710-exon-sc0003617-1491911889:2151..2217Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1510915933:2151..2217TCONS_00042710-exon-sc0003617-1510915933:2151..2217Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1575043694:2151..2217TCONS_00042710-exon-sc0003617-1575043694:2151..2217Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1491911889:4424..4551TCONS_00042710-exon-sc0003617-1491911889:4424..4551Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1510915933:4424..4551TCONS_00042710-exon-sc0003617-1510915933:4424..4551Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1575043694:4424..4551TCONS_00042710-exon-sc0003617-1575043694:4424..4551Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1491911889:4754..4883TCONS_00042710-exon-sc0003617-1491911889:4754..4883Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1510915933:4754..4883TCONS_00042710-exon-sc0003617-1510915933:4754..4883Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1575043694:4754..4883TCONS_00042710-exon-sc0003617-1575043694:4754..4883Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1491911889:5221..5335TCONS_00042710-exon-sc0003617-1491911889:5221..5335Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1510915933:5221..5335TCONS_00042710-exon-sc0003617-1510915933:5221..5335Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1575043694:5221..5335TCONS_00042710-exon-sc0003617-1575043694:5221..5335Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1491911889:6309..6632TCONS_00042710-exon-sc0003617-1491911889:6309..6632Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1510915933:6309..6632TCONS_00042710-exon-sc0003617-1510915933:6309..6632Clytia hemisphaericaexon
TCONS_00042710-exon-sc0003617-1575043694:6309..6632TCONS_00042710-exon-sc0003617-1575043694:6309..6632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003617supercontigsc0003617:2151..6632 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11009	3.44019	3.63676	5.99055	0	0	0	0	0	0.14682	0.025653	0.0913912	0.107694	0	0	0.115648	0.178828	0.196742	0.482863	0.158185	0	0	6.43189	0.470625	0	0	9.31985e-10	0	0.182562	0.683383
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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