TCONS_00042718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042718
Unique NameTCONS_00042718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042718 ID=TCONS_00042718|Name=TCONS_00042718|organism=Clytia hemisphaerica|type=transcript|length=792bp
AAGGTATTTCAAAAACAGATGGGCGACTTCAAATCAAGGATATCTTCAAC
AAACAAGATGTATTGTGattagaattgaaatatatacATCTAACACccaa
tgctgaaaaatatttcgtCGCAATGATGGTTTTTGAatcataactttaat
tttctggctattttattaTAACACCGAATCAATTTGTCACTGGATGGATT
CTTTGGATATCTTGATATATGTGGCTTGGCTGGTAGACCTGGTAGATTAG
AATTATCAACAGCGATGATGAAAAGATTGCTATTAACACTAACAATATTt
ggaatatcttaaaatttggaTAATGTACTAGAGACTAGCTCACAGCAGGC
TACAAACTGAAATTGTGAGGGTTATTGCATCAGtatatatatgaaaatat
ttggtACCTCAACCGTGAAATTGTGATGTATGTCATTTGTAGAAAGTGAA
CTCAAATATACAATTGATTATGCCTGGGTCATTGACTAAATAAGCGCCAT
CTGCCATCTCATGGACAGAATCTgagatttacaaaaataacGTACATTCA
ATTGGCTAAAAATGGAAAGAGTATTGAAAGCTTGGATATTACTTTTAAAA
CAGTGTGCCAGATTTTTAATTTGGCAAGACTGGTTTCTggcaaataaaaa
aagtattgcTTGTAGATAATCTTGAACAAATTTATATAGATGAATTCTTT
GGCCAGgtaattttaacaaattatagAAAGCAAACAGAAGCAAACTATAT
AAATTAATCAGTCAGTCATCATAATGATATTAATTTTGAGAG
Run BLAST on NCBI

transcript from alignment at sc0003626:9558..10349

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042718 ID=TCONS_00042718|Name=TCONS_00042718|organism=Clytia hemisphaerica|type=transcript|length=792bp|location=Sequence derived from alignment at sc0003626:9558..10349 (Clytia hemisphaerica)
CTCTCAAAATTAATATCATTATGATGACTGACTGATTAATTTATATAGTT
TGCTTCTGTTTGCTTTctataatttgttaaaattacCTGGCCAAAGAATT
CATCTATATAAATTTGTTCAAGATTATCTACAAgcaatactttttttatt
tgccAGAAACCAGTCTTGCCAAATTAAAAATCTGGCACACTGTTTTAAAA
GTAATATCCAAGCTTTCAATACTCTTTCCATTTTTAGCCAATTGAATGTA
CgttatttttgtaaatctcAGATTCTGTCCATGAGATGGCAGATGGCGCT
TATTTAGTCAATGACCCAGGCATAATCAATTGTATATTTGAGTTCACTTT
CTACAAATGACATACATCACAATTTCACGGTTGAGGTaccaaatattttc
atatatataCTGATGCAATAACCCTCACAATTTCAGTTTGTAGCCTGCTG
TGAGCTAGTCTCTAGTACATTAtccaaattttaagatattccaAATATTG
TTAGTGTTAATAGCAATCTTTTCATCATCGCTGTTGATAATTCTAATCTA
CCAGGTCTACCAGCCAAGCCACATATATCAAGATATCCAAAGAATCCATC
CAGTGACAAATTGATTCGGTGTTAtaataaaatagccagaaaattaaagt
tatgatTCAAAAACCATCATTGCGacgaaatatttttcagcattggGTGT
TAGATgtatatatttcaattctaatCACAATACATCTTGTTTGTTGAAGA
TATCCTTGATTTGAAGTCGCCCATCTGTTTTTGAAATACCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026525XLOC_026525Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042718-exon-sc0003626-1491911889:9558..10349TCONS_00042718-exon-sc0003626-1491911889:9558..10349Clytia hemisphaericaexon
TCONS_00042718-exon-sc0003626-1510915933:9558..10349TCONS_00042718-exon-sc0003626-1510915933:9558..10349Clytia hemisphaericaexon
TCONS_00042718-exon-sc0003626-1575043694:9558..10349TCONS_00042718-exon-sc0003626-1575043694:9558..10349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003626supercontigsc0003626:9558..10349 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.87765	3.37623	1.89504	1.46691	17.1256	10.1034	13.4092	15.5214	6.95162	21.2012	10.3657	8.75056	7.27221	4.43665	3.96914	6.18922	3.62328	4.25339	10.9597	15.4353	6.23249	5.88319	6.25492	5.83349	1.8991	3.4762	37.4367	34.1362	14.9806	13.3276
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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