TCONS_00042730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042730
Unique NameTCONS_00042730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1111

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042730 ID=TCONS_00042730|Name=TCONS_00042730|organism=Clytia hemisphaerica|type=transcript|length=1111bp
tttgtctGCACCATTGTGGAAAGagACAACATGAGTAAGCTGCTGTTCTT
CATTATCCTTGCGTGTATAAATGTGATGGACATATGGTGCATCGGCAGTG
GTAGATTAACCAGCAACAAAAGATACTGCGTTCCACAGCCATATAAACCT
GGTGGTGGAATCAAGACTGTTCAAGAGATTGTGGTACCCGAAGTGACTCT
TAAAACCAACTCCTTTCTCGGTGTGATTGCTAAAGGTGCCAAAAATACTG
GAGATGCTGGCAAAATTGCTCCTAAAGTGACAGCAGAGCTCGCAAAGTtt
ggaaagttctttaaaaCGGCTTCAAAAATGGCTCCGTGGTTAGGTGCTTT
AAGTGGAGCTCTTGGATTCATTGGGAAAGCTCCTTCAGCTCAAGATGCTG
TTGATGCTGTCAATGTGGCTTtcaagaaatttgctcaagagATCACCAAG
CGaatgaatgaaatgaaaggtTATGTTGATGATCGAATTGTGCAAACAGA
GAGCGAATGGGTTCAAAGACAATACCATGCATTGCTGAATGGATGGGCTA
ACTGCGTTGTCATTTACCACAAAGAGAGTGAAGTCAATGAATGTCAAAGA
AGAGCTTTCTTATCCATTCGTAGAGATCGCTCTCATTTTATGTTATTCAA
GGGTAAAAGTCCAAATCGTCAAGAACTGAAAAGACTCGAGTTTCAATTTG
TTACCATTCGAGAATATTCCTTCCTGACACTCCTTGTTTTACGCTCGTTG
ATCGATAGTTCAAAagctgaaaaaggaaaaatgaaagACTATGTTCGCAT
TTTAAAACTTGGCATGGTCATTCCAGAAGAGCTTGCTGATTATGCAAAAT
TCATCAACAATCAAATCTTGGATTTCTATGATAAACAAAGAAAGACTATT
TGTAGGAACACTTTCACTTGCACTAAGCTAAACCATGTTTACGGGAAAAC
CATCTTTGGTCAACGGAAAGAAAATCCACATAATCGGAACCTCGAATGCA
AATGCAAAATGATGCTTTGATCCAATGATCCAGGTGCTTTGGCTCACGAG
TGGTGCACATACCGAGTCGATGTTAGTGTCAATAAAAACGAAAAGTGGAC
CCAACACTATG
Run BLAST on NCBI

protein sequence of TCONS_00042730-protein

>TCONS_00042730-protein ID=TCONS_00042730-protein|Name=TCONS_00042730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
FVCTIVERDNMSKLLFFIILACINVMDIWCIGSGRLTSNKRYCVPQPYKP
GGGIKTVQEIVVPEVTLKTNSFLGVIAKGAKNTGDAGKIAPKVTAELAKF
GKFFKTASKMAPWLGALSGALGFIGKAPSAQDAVDAVNVAFKKFAQEITK
RMNEMKGYVDDRIVQTESEWVQRQYHALLNGWANCVVIYHKESEVNECQR
RAFLSIRRDRSHFMLFKGKSPNRQELKRLEFQFVTIREYSFLTLLVLRSL
IDSSKAEKGKMKDYVRILKLGMVIPEELADYAKFINNQILDFYDKQRKTI
CRNTFTCTKLNHVYGKTIFGQRKENPHNRNLECKCKMML
Run BLAST on NCBI

transcript from alignment at sc0003635:1299..4989-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042730 ID=TCONS_00042730|Name=TCONS_00042730|organism=Clytia hemisphaerica|type=transcript|length=3691bp|location=Sequence derived from alignment at sc0003635:1299..4989- (Clytia hemisphaerica)
TTTGTCTGCACCATTGTGGAAAGGTACGTTTGATATTTATTTCTATATAT
CCTCTTCTTCTCTTTAAGTCCAGTAGCATGGAGAGATGTACCGGGCTTTC
AGCAGTCACGTTGGAAAAATATTTGTATACATTTCGAAGAATCCCACTAA
CAGCGCACATATATTGTGAACTCCTTCGTGGTTATCCGAAGTGGTTATTT
TGCATTAGTTCCCACGGGTGGGAAAGTCGAATTAATAGGGTGTGAAAGTC
AAATTAATAGGGTGGGAAAGTCAAATTAATAGGGTAGGAAACAGTGGCGT
TGTGGCAGGGGGGCCGGGGGGGGCCATGGCCCCNGTTTTTTTTGTGTACA
ATATAGCATTAACCATTATTAAATTAAAATCTAACTGCGCCCCCAAGCCC
AATATGCCGACAACAATATTGGAATTATAAAACATCATAAATTTTTTCGC
TCGCTTCTNATATAGCATTAACCATTATTAAATTAAAATCTAACTGCGCC
CCCAAGCCCAATATGCCGACAACAATATTGGAATTATAAAACATCATAAA
TTTTTTCGCTCGCTTCTCTCTCATAACACATTGTTCATTTAACTTTCTTT
TCACTCTAGCACAAGTGTCAAATTTGTCTATTTTCATTTAGTGATTTAGG
GTATCTTGGCAGTTGATTCAAAAAAATTTTCTAGTCGACCCCAACACCAT
GGTGGGGCCTGTTTTTCCCTTTTACATTCATCAAAGATAAATCTACTCTT
CTCCAATAAATATTTCCTTCCTCATTATGCCTAGGCAAATAAATTTAGTA
AAAGTTTAGAAAATGGTGGGTGGGGGCACCTCTTTGGAAAATTGGGGAGG
GGCGCCATTTAAAAAAAATTGACTTTGGCCCCTCCAGAAAAATTTTCCCA
CAACGCCACTGGTAGGAAAGTACAACTAATAGGGTGGGAAAGTACAATAT
ATAGGGTGGGAAAGTACAATTTCCCATACTTGTACTACGGATCTTGCGTA
AAAAAAACACAAGTGAAAATTGAGTCAAAACTGTTCAGATTGTATGCAAA
TCATTAACATTATAAGGGTGCATTCGATCAGTGTGTAACACAACGCTAAA
GGTGAGGCGTCCCGCAAGGGTGGCCTCGTTCGTTCGCAATGGACTTGCGT
TGCAAGGGCTCAGTGGAATTGTCAGTCGCCTTGCGGCCGTTCAATCGGTA
CCATGTCGTTGTTCCACTGTTGTGACAAGTGCCGGGATTCTCAAAGTAGC
GCAATTACATGACAGAACGAATGGGAGCTACATGTTTTTTTTTTATAAGC
AAGTGTATGTCCCTTGGTCAGGCTTGTGTATGCCTAAGCTCTCAAAGTAT
CCAGGCATAGTTTATGCTTATTATATGCTTAAGAATCATGCTAATGATTC
ACCCCGAGCCAAGTTTTTAAATAAATTTTAGTAATTTTGTAAACATTTGT
TCAGATTTTGGGAGCAGTGGAATGTTAGCGAGCCGTGGAATGTCTTATTT
TTTACTTGACCTCTACCAAACCTTTTTAAACAGATAAAAATGACCACTTG
AAAAATATTTTAGGCTGACATATATGCTTATAAGCGTTATGCTTATAAAA
AAAACATGTATCGAGCCAATGCTCACGAATGATCGAATACATTTAACAAT
GTATCAAATAATTGGTAATAGCTAGGTGGGGGAATTGAAATTTCGGCGTG
TGATTTTCATTTTCACTATTCTCAGCACAATGTCAAGAGCAACAACCTCT
TGCATGTTAATTTAGTTTTAAACTGCTGGAAATTGTTTTTTCAACGTGGG
TTTTATAGAGTGGTATTTGGCACTTACGGAAAATATTGGGTTTGTTTTGT
AAAATCCGCATTGGCGATGTTTTTTTAGTTGGATTTGAAAGCTGCGTATA
ACTGAATACGAAAAATCGATCGCCAAAGTTTTTGATAGGGAAAAATCATT
CGTCTCACTAGCGAAATTTCAACTATTTCGATAGTGAAAAATCTATTTTT
TTGATAGCGAAAAATCAATCTTTTCGATAACGAAAAAGAAATCTTTTTGA
TAAAAAAGAAAAACTTTGGATGGCGAATTTCAAAGTTTTAAGGTGCGAAA
AATACGTTTTTCGATAGTGATTTACTCTTATTCTGATTGCGAGACAATCA
TAGTTTTGCAACATATAGGGCGCGTCATATCATGTAAGTCTTCATGTTTA
TGAAATATAAATTCTTACTTAATGTCCTTAATTACATGTATAATTGTTGA
AAACAATTAAGGTGAGAATCAATTTTTTTATTGCATGTGTCATAAAAAGC
TAAAAATAATTAAACTGTTCATTAAACAATATGTCCCATGAGATTTGATT
TGGCTTTTTTGACTTATTTTCCAGATGACAATAAAAAGAAATGCACTCCA
CGTAGAGACTTTTTAAAAACACGTTTGCACGCAAAATCTCTCTAAACGTA
ACAAACCCTACTACCGTCAGCCACATAAAGAAATAGGATTTGGTACAGGC
TTGTCCTACTAAATCTGACAGATAATTAAAGTTCCATTTACGGCTCTTTT
AGAAATGACTTGCGACTATACAGCATTACGTAATGTATTTTTTTAAATTT
CAGAGACAACATGAGTAAGCTGCTGTTCTTCATTATCCTTGCGTGTATAA
ATGTGATGGACATATGGTGCATCGGCAGTGGTAGATTAACCAGCAACAAA
AGATACTGCGTTCCACAGCCATATAAACCTGGTGGTGGAATCAAGACTGT
TCAAGAGATTGTGGTACCCGAAGTGACTCTTAAAACCAACTCCTTTCTCG
GTGTGATTGCTAAAGGTGCCAAAAATACTGGAGATGCTGGCAAAATTGCT
CCTAAAGTGACAGCAGAGCTCGCAAAGTTTGGAAAGTTCTTTAAAACGGC
TTCAAAAATGGCTCCGTGGTTAGGTGCTTTAAGTGGAGCTCTTGGATTCA
TTGGGAAAGCTCCTTCAGCTCAAGATGCTGTTGATGCTGTCAATGTGGCT
TTCAAGAAATTTGCTCAAGAGATCACCAAGCGAATGAATGAAATGAAAGG
TTATGTTGATGATCGAATTGTGCAAACAGAGAGCGAATGGGTTCAAAGAC
AATACCATGCATTGCTGAATGGATGGGCTAACTGCGTTGTCATTTACCAC
AAAGAGAGTGAAGTCAATGAATGTCAAAGAAGAGCTTTCTTATCCATTCG
TAGAGATCGCTCTCATTTTATGTTATTCAAGGGTAAAAGTCCAAATCGTC
AAGAACTGAAAAGACTCGAGTTTCAATTTGTTACCATTCGAGAATATTCC
TTCCTGACACTCCTTGTTTTACGCTCGTTGATCGATAGTTCAAAAGCTGA
AAAAGGAAAAATGAAAGACTATGTTCGCATTTTAAAACTTGGCATGGTCA
TTCCAGAAGAGCTTGCTGATTATGCAAAATTCATCAACAATCAAATCTTG
GATTTCTATGATAAACAAAGAAAGACTATTTGTAGGAACACTTTCACTTG
CACTAAGCTAAACCATGTTTACGGGAAAACCATCTTTGGTCAACGGAAAG
AAAATCCACATAATCGGAACCTCGAATGCAAATGCAAAATGATGCTTTGA
TCCAATGATCCAGGTGCTTTGGCTCACGAGTGGTGCACATACCGAGTCGA
TGTTAGTGTCAATAAAAACGAAAAGTGGACCCAACACTATG

Coding sequence (CDS) from alignment at sc0003635:1299..4989-

>TCONS_00042730 ID=TCONS_00042730|Name=TCONS_00042730|organism=Clytia hemisphaerica|type=CDS|length=2040bp|location=Sequence derived from alignment at sc0003635:1299..4989- (Clytia hemisphaerica)
AGACAACATGAGTAAGCTGCTGTTCTTCATTATCCTTGCGTGTATAAATG
TGATGGACATATGGTGCATCGGCAGTGGTAGATTAACCAGCAACAAAAGA
TACTGCGTTCCACAGCCATATAAACCTGGTGGTGGAATCAAGACTGTTCA
AGAGATTGTGGTACCCGAAGTGACTCTTAAAACCAACTCCTTTCTCGGTG
TGATTGCTAAAGGTGCCAAAAATACTGGAGATGCTGGCAAAATTGCTCCT
AAAGTGACAGCAGAGCTCGCAAAGTTTGGAAAGTTCTTTAAAACGGCTTC
AAAAATGGCTCCGTGGTTAGGTGCTTTAAGTGGAGCTCTTGGATTCATTG
GGAAAGCTCCTTCAGCTCAAGATGCTGTTGATGCTGTCAATGTGGCTTTC
AAGAAATTTGCTCAAGAGATCACCAAGCGAATGAATGAAATGAAAGGTTA
TGTTGATGATCGAATTGTGCAAACAGAGAGCGAATGGGTTCAAAGACAAT
ACCATGCATTGCTGAATGGATGGGCTAACTGCGTTGTCATTTACCACAAA
GAGAGTGAAGTCAATGAATGTCAAAGAAGAGCTTTCTTATCCATTCGTAG
AGATCGCTCTCATTTTATGTTATTCAAGGGTAAAAGTCCAAATCGTCAAG
AACTGAAAAGACTCGAGTTTCAATTTGTTACCATTCGAGAATATTCCTTC
CTGACACTCCTTGTTTTACGCTCGTTGATCGATAGTTCAAAAGCTGAAAA
AGGAAAAATGAAAGACTATGTTCGCATTTTAAAACTTGGCATGGTCATTC
CAGAAGAGCTTGCTGATTATGCAAAATTCATCAACAATCAAATCTTGGAT
TTCTATGATAAACAAAGAAAGACTATTTGTAGGAACACTTTCACTTGCAC
TAAGCTAAACCATGTTTACGGGAAAACCATCTTTGGTCAACGGAAAGAAA
ATCCACATAATCGGAACCTCGAATGCAAATGCAAAATGATGCTTTGATTT
GTCTGCACCATTGTGGAAAGAGACAACATGAGTAAGCTGCTGTTCTTCAT
TATCCTTGCGTGTATAAATGTGATGGACATATGGTGCATCGGCAGTGGTA
GATTAACCAGCAACAAAAGATACTGCGTTCCACAGCCATATAAACCTGGT
GGTGGAATCAAGACTGTTCAAGAGATTGTGGTACCCGAAGTGACTCTTAA
AACCAACTCCTTTCTCGGTGTGATTGCTAAAGGTGCCAAAAATACTGGAG
ATGCTGGCAAAATTGCTCCTAAAGTGACAGCAGAGCTCGCAAAGTTTGGA
AAGTTCTTTAAAACGGCTTCAAAAATGGCTCCGTGGTTAGGTGCTTTAAG
TGGAGCTCTTGGATTCATTGGGAAAGCTCCTTCAGCTCAAGATGCTGTTG
ATGCTGTCAATGTGGCTTTCAAGAAATTTGCTCAAGAGATCACCAAGCGA
ATGAATGAAATGAAAGGTTATGTTGATGATCGAATTGTGCAAACAGAGAG
CGAATGGGTTCAAAGACAATACCATGCATTGCTGAATGGATGGGCTAACT
GCGTTGTCATTTACCACAAAGAGAGTGAAGTCAATGAATGTCAAAGAAGA
GCTTTCTTATCCATTCGTAGAGATCGCTCTCATTTTATGTTATTCAAGGG
TAAAAGTCCAAATCGTCAAGAACTGAAAAGACTCGAGTTTCAATTTGTTA
CCATTCGAGAATATTCCTTCCTGACACTCCTTGTTTTACGCTCGTTGATC
GATAGTTCAAAAGCTGAAAAAGGAAAAATGAAAGACTATGTTCGCATTTT
AAAACTTGGCATGGTCATTCCAGAAGAGCTTGCTGATTATGCAAAATTCA
TCAACAATCAAATCTTGGATTTCTATGATAAACAAAGAAAGACTATTTGT
AGGAACACTTTCACTTGCACTAAGCTAAACCATGTTTACGGGAAAACCAT
CTTTGGTCAACGGAAAGAAAATCCACATAATCGGAACCTCGAATGCAAAT
GCAAAATGATGCTTTGATTTGTCTGCACCATTGTGGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026534XLOC_026534Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042730-proteinTCONS_00042730-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042730-exon-sc0003635-1575043694:4967..4989TCONS_00042730-exon-sc0003635-1575043694:4967..4989Clytia hemisphaericaexon
TCONS_00042730-exon-sc0003635-1575043694:1299..2386TCONS_00042730-exon-sc0003635-1575043694:1299..2386Clytia hemisphaericaexon
TCONS_00042730-exon-sc0003635-1510915933:4967..4989TCONS_00042730-exon-sc0003635-1510915933:4967..4989Clytia hemisphaericaexon
TCONS_00042730-exon-sc0003635-1510915933:1299..2386TCONS_00042730-exon-sc0003635-1510915933:1299..2386Clytia hemisphaericaexon
TCONS_00042730-exon-sc0003635-1491911889:4967..4989TCONS_00042730-exon-sc0003635-1491911889:4967..4989Clytia hemisphaericaexon
TCONS_00042730-exon-sc0003635-1491911889:1299..2386TCONS_00042730-exon-sc0003635-1491911889:1299..2386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003635supercontigsc0003635:1299..4989 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.347492	0.50108	0.146605	0	8.07256	5.76406	4.45289	5.10863	3.72697	5.24777	0.262363	3.21485	0	0	0	0	0.137043	0	0	0	0	0	0.981881	0.632929	0	0	0	0.115116	0.485521	0.826519
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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