|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042732 ID=TCONS_00042732|Name=TCONS_00042732|organism=Clytia hemisphaerica|type=transcript|length=903bp
CtttaaagttatgatacaataAAGCGAAGTGTATAGGATATGAgATATGG
GAGCTGCAGGACTTCACTGGATTTGTAGTGTTCCGATCGGAATCACAATC
TCCTTAATCGGTTTAATCGGGAACGttatttccgtcataatttGGTTCCA
CTTAAACCAATCCAAGTCAAGACGCAATAAATCAACCGCTCAATACTTTA
TCTCCTTAGCATTTTGCGATAGTGCGTTGCTGTTATTCTTTTTACTCCAC
GATTCATTACCAAGTCTGGTTTCTACCATCAAAAGCAATTATTATTACGC
AGCAACATGGTGCTGGTTTCTATTCCCGATGTTCTTTTTCGCATTGGTGT
GCAGTATCTGGGTCGTAGTTGGTGTCACCATCAATCGATACATCATGATT
GCCTTTCCGACCAAGGTCCAGATTATTTACTCAGATACCCGTTCTAAAAT
CGGAATTTTCGGCATCACACTATTCGCTTTCCTCGTCAATTTGCCACACT
TCTTTACGTACCACGCCGTCAAAGACGGGGAAAACGGTGACTATAAGATT
ACACATACGGAATACGGGGCCTCGGAAGCATCCACTAATTATGAATTTTG
GGCTCATTGCATAGCTCTTGTTTTGGGACCATGGGTCGTCATTGCGATCT
TGAATGGTTTGataatcaagattttgaaaaaccaaATGAAGAAATTTACT
AAAGAAAAACCCACCAAGCAAATGCGACAAGAGCAACAAATGACACGAAC
TTTGCTTTTCATCACGTTTTCCTTCCTCATACTTTTGGCTTGGCAATGTG
TTACTCAATGTTTTTGGATGCTTGGATATGGGAAAGGTAAATNTTCCTCA
TACTTTTGGCTTGGCAATGTGTTACTCAATGTTTTTGGATGCTTGGATAT
GGG Run BLAST on NCBI transcript from alignment at sc0003637:5614..10107+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042732 ID=TCONS_00042732|Name=TCONS_00042732|organism=Clytia hemisphaerica|type=transcript|length=4494bp|location=Sequence derived from alignment at sc0003637:5614..10107+ (Clytia hemisphaerica)
CtttaaagttatgatacaataAAGCGAAGTGTATAGGATATGAggtaact
ttaatttttttttcttatgttATAAAAGAAATGTGTTTCGAATTTAAATT
CACTGTTTTTACTGAAATCAGGGTTGTTCCATAATGGTTCAAAGCTAAAA
GAAGAAGCATTCCTTTTTTTGAATGTGTACCATATTGTAGATCTTAAAAG
AAACTACTGATGCCTAGGCTAAGACAATTAACAAACTGTAGGTATTGTAg
gagggggaaatttgtaaaatcgttcgatttttttagtcaaagcacttgtt
atacatttttggaaagctaaggggtaggggaatcaaaacaacttgaatgt
caattttttttcggacaaatacgacggtctcaggcaaaaatcagggtgaa
aaattaataaaaatttagcttgagaaaatggagacctgttgtttcttttt
ggaaagctctcaaaaaattaagattaatgatatattgcgagtataggtga
tttcagtacctaactcaagatattgagcttccaaaagcgcaaaaactgga
caaaacaactgtttctggctgaaaaacactgtttttaagggttgatatct
cgagttaggtacagaagtCACCTATATTTGCAAGATATCTCTaatcttct
taatttttttgagagctttctgaaaatatacaacaggtctccgttttctc
aagccaaaattttcattaatttttcaccctatgatttttgcctgagaccg
tcgtatttgtccgaaaatcacaccaaagtgtctgaaaaaaaattggcaac
cAAGTtgttttgattcccctaccccttagctttccaaaaatatataaaaa
gtgctttgactaaaaaaatcgagtgacctcaaaaaaacgaacaaatttcc
cttTATTATTTTAATTAGAAGAGAGTATTttgtagttttttctttttcag
attcttttttaattgttttttgtcCTCAGTAGCCAGAGCAGCGTAGGCAG
GTCTTTTTTTCTAATCGTAACGAGAAATCTCACAGTTGGATGGAGgtctt
ttttaaattatgaaaGAGCCTTTGCTAAGGTCTTTTTTTGCCTTTGgttt
aatacacctttccgaCCGTAGCCGCCGCGCGtgcatttttttgtccattt
taccacattaaaaccgtcccagtcttttttcgcaccaatagacaatagaa
aaagctgtaaaaaaggattggatcgagctTAAGGTGACTAATTAATTAAT
AAAATGGCAcgcacctgaccgcgcgactacggtcgaaaaggtgtattccc
aAAAGAGTGctaaatcataaaaaatgattACTGCTAAAATATCATGTACT
AAAAACaggaatcctatgaaatagagTAATAACGTTAAGTGCACTGGGTT
ATTACTTCTCAGCCAAAAAAACCTCAcccgtacccagagccactttcACT
GCTCTTTGATTTCACTAACAANTTaaaaacacgaatcctatgaaatagag
TAATAACGTTATGTGCATTGGGTTATTACTTCTTAGCCAAAAAACCTCAC
CCGTACCCAGAGCTACTTTCACTGCTTTTTGATTTCACTAACAAACCTTT
CGTAAGCACTATCAgaataataaaacaataaaaaaaactaaGGGACTGAG
TTTAGTTCATGAGTTTTCTACAAACTATTCAATAGCTTTAATATCATTTT
GCTTTTTGGATCCGAGAAATTTTTCCCGGTCAAATTGTTGAAAAAGATCC
ATTCTTTTGTAAAGTAACTTTTTCAGAAATTATCTTCAAAGGGGGTAATC
ATTGAACTTCATTTCTCAAAACAGGGATTTTAGGATTGGTGACCTCGAGG
TGAATCactttcataaatttttgtcaatctaaCTGAACATTCAGTTGCTA
GTTGTCCATCACACGCTTCTTTTTCCATACGAACAAAAATATATGAACAT
AAGGCATACTCTTTGTGTGCTTGattgtaggggggggggggcattttgca
atttttggaaaNCAAAAATATATGAACATAAGGCATACTCTTTGTGTGCT
TGattgtagggggggggggtcattctACAATTTTTGGAAAGAAATCACCC
TCATATCACTTTATAAAGAtccccccattttatgacctttatgctacgaa
gtgccaaaattggccaaaaccgcCAAAacccttcattttcctagggattt
tcaGCATAATGGTATAATAAGGTCAATAGCACTTAATGTAGATTTTTATC
TGGAGTACATAcccaccccctgcttattccaccccctaAAATTAACACAA
GAGTACCCTGTCAGAAGATTAGGCATTTCGGACACATCCCAATAAGAAag
gaacattcgaaggcttcttataaaaaaagtgtagtaGAACAGAAAACCTA
ACAGAAGaggttttttctgattttcttttccattttcattcaacaGATAT
GGGAGCTGCAGGACTTCACTGGATTTGTAGTGTTCCGATCGGAATCACAA
TCTCCTTAATCGGTTTAATCGGGAACGttatttccgtcataatttGGTTC
CACTTAAACCAATCCAAGTCAAGACGCAATAAATCAACCGCTCAATACTT
TATCTCCTTAGCATTTTGCGATAGTGCGTTGCTGTTATTCTTTTTACTCC
ACGATTCATTACCAAGTCTGGTTTCTACCATCAAAAGCAATTATTATTAC
GCAGCAACATGGTGCTGGTTTCTATTCCCGATGTTCTTTTTCGCATTGGT
GTGCAGTATCTGGGTCGTAGTTGGTGTCACCATCAATCGATACATCATGA
TTGCCTTTCCGACCAAGGTAAAAGTTTAGAATTTAATCTCGCAAGGTTgc
gggttcaacccccagccgggtcatactaaagattctcaaaatggtacttg
atgcctctctgtttgattctcagcaattaagagaaggatcaagggtagtt
ggagcaatccagggagaaagagtggtgccctcccTTTACCTTCGGATAGT
tagctatcaaaagaggagccttcgggtcgtcTCCGACTGCAGTCACAGAC
TTAAAAATTATACACATCCCTTTCACAGCTGATTGTGAGTGGTTGCAATT
GACATGTTTGGGCCAGTACAACGGTGTATTATACACTTCTGAGTGCTTTG
ATACGTATAAAAGCGAAACAAAATCCTATACTCAATTTAGTAGCACTAAG
TCCTTATCGGTCATTAAACTGTCACAGGATCCCATAATAAGGTAAAGTCT
CGATGACTCGAACCTATACAACTTGAATATCTCCTAGCTCGAACAAGTTa
gctggtcccttcagttagcAATGGCTttctcagctggcacacaacgttgt
ttcaacgtttatctaacgttcacaacgtccaaataacgttagatgaacgt
tgaaacaacgttatgagCTAGCTGGGCGCTCCTCAATATGCCTGTTCGAG
TTAttgagactccactgtataacgATTTATCTTATTGATTTTGTAGGTCC
AGATTATTTACTCAGATACCCGTTCTAAAATCGGAATTTTCGGCATCACA
CTATTCGCTTTCCTCGTCAATTTGCCACACTTCTTTACGTACCACGCCGT
CAAAGACGGGGAAAACGGTGACTATAAGATTACACATACGGAATACGGGG
CCTCGGAAGCATCCACTAATTATGAATTTTGGGCTCATTGCATAGCTCTT
GTTTTGGGACCATGGGTCGTCATTGCGATCTTGAATGGTTTGataatcaa
gattttgaaaaaccaaATGAAGAAATTTACTAAAGAAAAACGTAAGTATC
AAAAGCAGTTTGCGCAAGCCATTCTAAGAATAAGATATTGGTCAGTCAAA
TCTAATGTAACTATGATCTAATAAAAAATTAGTTATGAATTCTTTCAACT
TTACCCTTTTAAAGAGTACTTGATTAAAAAACAACCCGAATTTAGTCAAA
AAGTTCCATAATAATGTTATACCCTCTAAAACTTGGTTCAGCCTCAGCTA
CACTGTCATATTTTCAGACTTCGCAATTTTCAGTTTCATATTATCCTTGA
TTTGTAAATTAGGCCTCGTTTGTTAtaaaagagccccccccccagcagAC
CTTCAATCCAAGCAATCACGCAATAtgttttcgaaattcacgcatttacg
caactcgtttaaaattttcacgcgttcacgcattcacgcatgtGAAAAAG
CTCATTCAAGGATTCACGTGCAGACCACTTGGGACCCCTATAAAACAAGT
TATTTATAAAcattataaacattttttttaatttttgatttttccaactA
GCCACCAAGCAAATGCGACAAGAGCAACAAATGACACGAACTTTGCTTTT
CATCACGTTTTCCTTCCTCATACTTTTGGCTTGGCAATGTGTTACTCAAT
GTTTTTGGATGCTTGGATATGGGAAAGGTAAATNTTCCTCATACTTTTGG
CTTGGCAATGTGTTACTCAATGTTTTTGGATGCTTGGATATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042732-exon-sc0003637-1491911889:5614..5657 | TCONS_00042732-exon-sc0003637-1491911889:5614..5657 | Clytia hemisphaerica | exon |
| TCONS_00042732-exon-sc0003637-1510915933:5614..5657 | TCONS_00042732-exon-sc0003637-1510915933:5614..5657 | Clytia hemisphaerica | exon |
| TCONS_00042732-exon-sc0003637-1575043694:5614..5657 | TCONS_00042732-exon-sc0003637-1575043694:5614..5657 | Clytia hemisphaerica | exon |
| TCONS_00042732-exon-sc0003637-1491911889:8060..8430 | TCONS_00042732-exon-sc0003637-1491911889:8060..8430 | Clytia hemisphaerica | exon |
| TCONS_00042732-exon-sc0003637-1510915933:8060..8430 | TCONS_00042732-exon-sc0003637-1510915933:8060..8430 | Clytia hemisphaerica | exon |
| TCONS_00042732-exon-sc0003637-1575043694:8060..8430 | TCONS_00042732-exon-sc0003637-1575043694:8060..8430 | Clytia hemisphaerica | exon |
| TCONS_00042732-exon-sc0003637-1491911889:9110..9404 | TCONS_00042732-exon-sc0003637-1491911889:9110..9404 | Clytia hemisphaerica | exon |
| TCONS_00042732-exon-sc0003637-1510915933:9110..9404 | TCONS_00042732-exon-sc0003637-1510915933:9110..9404 | Clytia hemisphaerica | exon |
| TCONS_00042732-exon-sc0003637-1575043694:9110..9404 | TCONS_00042732-exon-sc0003637-1575043694:9110..9404 | Clytia hemisphaerica | exon |
| TCONS_00042732-exon-sc0003637-1491911889:9915..10107 | TCONS_00042732-exon-sc0003637-1491911889:9915..10107 | Clytia hemisphaerica | exon |
| TCONS_00042732-exon-sc0003637-1510915933:9915..10107 | TCONS_00042732-exon-sc0003637-1510915933:9915..10107 | Clytia hemisphaerica | exon |
| TCONS_00042732-exon-sc0003637-1575043694:9915..10107 | TCONS_00042732-exon-sc0003637-1575043694:9915..10107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003637 | supercontig | sc0003637:5614..10107 + |
Blast
The following BLAST results are available for this feature:
|
