TCONS_00042734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042734
Unique NameTCONS_00042734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042734 ID=TCONS_00042734|Name=TCONS_00042734|organism=Clytia hemisphaerica|type=transcript|length=760bp
TGGAGCTGAAAAAATGCCACTggtcttataagaaaaaacaatgaaaaatt
aatgGTTTTCATATCTACTTCGAAGTGAAAAAGAACACATAAAAAACAGT
ATTATACTAACAATAGTTTACTTTCTACCGCCAACTCGACTTTTTTAACC
TACGCTTTTAATGATTTGATGTTTCTTCTCTGAAAAATAAGTCCTTGTTT
AGTGAAACCAAAAGCTATTTCACAAGAAGTAAAAGTTGTCTTCTATCACG
CTCAtgtaaaacagcaaaaaacttgGATAATCGCGCatccctttaaaaaa
aaatccaaatcacgcatcacggctcaaaaatctttcgaatCACGATCACA
TTTTGACCTCTGATCTCATAATCACGAAAAAATGATTTCTAAATCACGTA
ATCATGCTAAAAAAGGCCCTATAACGTCACGGATTATCGCAAGTCACCGA
CAGCACTGGAAATAAAGAGTCCTTATTGGACGCAGCGGCAAGATGTAAAG
ATGTAAAAAGACCACAAGAAAGATCAAGTAAGGAtaaaatgcaacaaaaa
aaaacagttaacttatcagaaaaaagtaaaaaacataTGATGAAAATCTA
GACCATGCTATTGTCCGCTAAAGGGATGTAATTTACAGCGATCACGGTGG
TATCGACAGAGAAAATTTCATGAAACTTAAACGTTTGAGTTTCATGAAAA
TATCGACGCTAGGAACACTGCGAACACCTCCGTAAATGTTTAAGCggtta
aaatttttat
Run BLAST on NCBI

transcript from alignment at sc0003637:1699..2458

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042734 ID=TCONS_00042734|Name=TCONS_00042734|organism=Clytia hemisphaerica|type=transcript|length=760bp|location=Sequence derived from alignment at sc0003637:1699..2458 (Clytia hemisphaerica)
ataaaaattttaaccGCTTAAACATTTACGGAGGTGTTCGCAGTGTTCCT
AGCGTCGATATTTTCATGAAACTCAAACGTTTAAGTTTCATGAAATTTTC
TCTGTCGATACCACCGTGATCGCTGTAAATTACATCCCTTTAGCGGACAA
TAGCATGGTCTAGATTTTCATCAtatgttttttacttttttctgataagt
taactgtttttttttgttgcattttaTCCTTACTTGATCTTTCTTGTGGT
CTTTTTACATCTTTACATCTTGCCGCTGCGTCCAATAAGGACTCTTTATT
TCCAGTGCTGTCGGTGACTTGCGATAATCCGTGACGTTATAGGGCCTTTT
TTAGCATGATTACGTGATTTAGAAATCATTTTTTCGTGATTATGAGATCA
GAGGTCAAAATGTGATCGTGattcgaaagatttttgagccgtgatgcgtg
atttggatttttttttaaagggatGCGCGATTATCcaagttttttgctgt
tttacaTGAGCGTGATAGAAGACAACTTTTACTTCTTGTGAAATAGCTTT
TGGTTTCACTAAACAAGGACTTATTTTTCAGAGAAGAAACATCAAATCAT
TAAAAGCGTAGGTTAAAAAAGTCGAGTTGGCGGTAGAAAGTAAACTATTG
TTAGTATAATACTGTTTTTTATGTGTTCTTTTTCACTTCGAAGTAGATAT
GAAAACcattaatttttcattgttttttcttataagaccAGTGGCATTTT
TTCAGCTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026537XLOC_026537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042734-exon-sc0003637-1491911889:1699..2458TCONS_00042734-exon-sc0003637-1491911889:1699..2458Clytia hemisphaericaexon
TCONS_00042734-exon-sc0003637-1510915933:1699..2458TCONS_00042734-exon-sc0003637-1510915933:1699..2458Clytia hemisphaericaexon
TCONS_00042734-exon-sc0003637-1575043694:1699..2458TCONS_00042734-exon-sc0003637-1575043694:1699..2458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003637supercontigsc0003637:1699..2458 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.257552	0.251153	0.65613	0.427947	0.347323	0.205844	0.331123	0.232495	0.217034	0.0672079	0.0652336	0.21441	0.0428224	0.0889429	0	0	0	0.247713	0	0.214871	0.186762	0.0910958	0	0.201355	0.0691305	0.370184	0.0882886	0.282672	0.214397	0.218436
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top