TCONS_00042741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042741
Unique NameTCONS_00042741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042741 ID=TCONS_00042741|Name=TCONS_00042741|organism=Clytia hemisphaerica|type=transcript|length=315bp
CTGGGTACACATGTATTCAGATCCAAGAACCTTCTGATCCTGTGTGGGCT
CgtcaaacaaattatttttgtcaCGAAGCTGGAGAAAACATCCGCAATAT
CGGAATGAGGTGGTCATTTACAGGCAGAATTTCTACCATGAAGTGTCGGC
CAGTCTATGAACCGTCAGAGCCTGCAAAATACAAATGGCTCGACAACTTC
ATTTGTGTACCAATAGATGCTCCGTACGAATTCCAATTTTTCAACTACGT
TCCGCGAATGAATTACAGATGTCGTTGTCTCCAATGGTACAATGCTAAAG
ATCCGGACACATGGG
Run BLAST on NCBI

protein sequence of TCONS_00042741-protein

>TCONS_00042741-protein ID=TCONS_00042741-protein|Name=TCONS_00042741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
GYTCIQIQEPSDPVWARQTNYFCHEAGENIRNIGMRWSFTGRISTMKCRP
VYEPSEPAKYKWLDNFICVPIDAPYEFQFFNYVPRMNYRCRCLQWYNAKD
PDTW
Run BLAST on NCBI

transcript from alignment at sc0003643:10245..10805-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042741 ID=TCONS_00042741|Name=TCONS_00042741|organism=Clytia hemisphaerica|type=transcript|length=561bp|location=Sequence derived from alignment at sc0003643:10245..10805- (Clytia hemisphaerica)
CTGGGTACACATGTATTCAGATCCAAGAACCTTCTGATCCTGTGTGGGCT
CGTCAAACAAATTATTTTTGTCACGAAGCTGGAGAAAACATCCGCAATAT
CGGAATGAGGTGGTCATTTACAGGTTCGTTAACTTGTACTAACATTTATT
TCTTTTAGATTCGCATTCCGGAAATAGTCCGTGCCCCCCCCCCCTGTTGA
GGATATTGCATATCCAGGGCGTTAACGATTTTTGTTAAAAAGTGGATATC
CAGGGGGTTAAATATCTACAAGGGAGCGGATATCCAGGGGTAAAGTAAAT
TGCTAATGAAAATCAAATTGTTCTCTGTACCTGTTTATTATTTATAATTT
TTCTTGAATTTTTCTTTAGGCAGAATTTCTACCATGAAGTGTCGGCCAGT
CTATGAACCGTCAGAGCCTGCAAAATACAAATGGCTCGACAACTTCATTT
GTGTACCAATAGATGCTCCGTACGAATTCCAATTTTTCAACTACGTTCCG
CGAATGAATTACAGATGTCGTTGTCTCCAATGGTACAATGCTAAAGATCC
GGACACATGGG

Coding sequence (CDS) from alignment at sc0003643:10245..10805-

>TCONS_00042741 ID=TCONS_00042741|Name=TCONS_00042741|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0003643:10245..10805- (Clytia hemisphaerica)
GCAGAATTTCTACCATGAAGTGTCGGCCAGTCTATGAACCGTCAGAGCCT
GCAAAATACAAATGGCTCGACAACTTCATTTGTGTACCAATAGATGCTCC
GTACGAATTCCAATTTTTCAACTACGTTCCGCGAATGAATTACAGATGTC
GTTGTCTCCAATGGTACAATGCTAAAGATCCGGACACATGGGGGTACACA
TGTATTCAGATCCAAGAACCTTCTGATCCTGTGTGGGCTCGTCAAACAAA
TTATTTTTGTCACGAAGCTGGAGAAAACATCCGCAATATCGGAATGAGGT
GGTCATTTACAGGCAGAATTTCTACCATGAAGTGTCGGCCAGTCTATGAA
CCGTCAGAGCCTGCAAAATACAAATGGCTCGACAACTTCATTTGTGTACC
AATAGATGCTCCGTACGAATTCCAATTTTTCAACTACGTTCCGCGAATGA
ATTACAGATGTCGTTGTCTCCAATGGTACAATGCTAAAGATCCGGACACA
TGGGGGTACACATGTATTCAGATCCAAGAACCTTCTGATCCTGTGTGGGC
TCGTCAAACAAATTATTTTTGTCACGAAGCTGGAGAAAACATCCGCAATA
TCGGAATGAGGTGGTCATTTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026544XLOC_026544Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042741-proteinTCONS_00042741-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042741-exon-sc0003643-1575043694:10683..10805TCONS_00042741-exon-sc0003643-1575043694:10683..10805Clytia hemisphaericaexon
TCONS_00042741-exon-sc0003643-1575043694:10245..10436TCONS_00042741-exon-sc0003643-1575043694:10245..10436Clytia hemisphaericaexon
TCONS_00042741-exon-sc0003643-1510915933:10683..10805TCONS_00042741-exon-sc0003643-1510915933:10683..10805Clytia hemisphaericaexon
TCONS_00042741-exon-sc0003643-1510915933:10245..10436TCONS_00042741-exon-sc0003643-1510915933:10245..10436Clytia hemisphaericaexon
TCONS_00042741-exon-sc0003643-1491911889:10683..10805TCONS_00042741-exon-sc0003643-1491911889:10683..10805Clytia hemisphaericaexon
TCONS_00042741-exon-sc0003643-1491911889:10245..10436TCONS_00042741-exon-sc0003643-1491911889:10245..10436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003643supercontigsc0003643:10245..10805 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.356584	0	0	0	0	0	0	12.5092	8.79375	49.4758	154.301	6.91429	5.45344	38.5439	34.8059	1.84351	0.719844	0	0.300337	0	0.320635	0	0	0	0.115483
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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