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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042743 ID=TCONS_00042743|Name=TCONS_00042743|organism=Clytia hemisphaerica|type=transcript|length=490bp
AACAACTTTGTTGATATTCTACGTCAATCAATTCAAGGTGAGATGACATG
AGATGATACTTACAAATGCATGCAAGACAAGTTATTTGGTCTTTCGAACT
GTTGATGAGTTTGTACGCATGACGGACACCAAGACATTACCATTGGACTT
GTGTTGCAGCGAAAAACCTGACTCATCACAGTTGAATATTTGTGAGGCTG
ACTTTATCCCCCTCTGTTGACATATCTCCTCCAGTTGGTTGAAGAATGTT
TCTAGTTTTTGTTTGCTGCACATAGCTCTGGAAATTATCAATTTGCCAGG
GCGTGCTAGTTTAAGATTTGGATGTCTTCTTTAAATAATTGAAACTACTT
TTTTCCGGGATAATTTGAGGCATCAAACTCTGAGCGACCTGCGAGGTCAA
GGATTTGTTTAACTGTCATTCTCACTTGTGTCGGTGTCTTTCCGCACCCA
ATTTTCGCCATTGCTTCCAACCACGTCACCAGATCATTCT Run BLAST on NCBI transcript from alignment at sc0003644:4492..7996+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042743 ID=TCONS_00042743|Name=TCONS_00042743|organism=Clytia hemisphaerica|type=transcript|length=3505bp|location=Sequence derived from alignment at sc0003644:4492..7996+ (Clytia hemisphaerica)
AACAACTTTGTTGATATTCTACGTCAATCAATTCAAGGTAACTTTcttat
catttattttttcaaaataatgcaATCTAGGGTCCTTAGATTGAGAATAA
CAAACCAAAATGCTCAACCTAGAATAAAGTATTCTGTTTgcaatttacac
gttttttttttaagaaacatgaggctcagaatgcctaaataCTAAGAAAC
AAGCTAAGAATTagaaagtaacatttttaattcgtttttttttaaagaac
cttcctatcaaaacaaatgtttttttctttgcatgaaaaagaGGCTTatc
atgtcaaaaagtttagaaacatgtaagaaacaatTAAAGCTCAAAAGGca
gatttcttaagaaacattgaaactgtttggtaaaactagtttcttaaaaa
acaaacttagTTGAATTCATATTATCTGATATATACAGCAATGAAGCTTT
AATCTGTTTCTCTGTTAtgataaaatttacaaaactaaattaacaaaatt
tgatttgattatattttGTTCTCAATTTTGATACAACTCACAACAATGAG
ATTAACATCTGTTAATATAGTGGATTCAGTACGAGAAATGTGGCCAGTAA
ATTTTATAAACTCAAACAAACTAAACCtgtatatttcaattttaatcaaa
agagaaagagaaattcTTAGAGGTGTACAAGatcttattatatttttttg
tgattttttattttttatgatttcttttataGAGTTTCCAGGAGTTACCA
CTTGTAATAAAGCATCTTCACAACACTGCAGGCAATTATCAAACAAGTTA
TCAAAAATGACACAATAGTTCTCACGATTTATCTTAATGACAGGTCTCTG
AATGTTTTATCTGACTAAAACAGGTGcatgatttcaatttttaaggtgCT
GATTGTGTTAACTTGAATTAGCTTTTAAAAATGGTGCTGACCTCTCAAAC
TCCTAGGGTAAAAGTTAAGCACATTCATcacattcaaaattgaaattgtg
GACCTGTGTCGGTGTCATTNTATAGCTTTTAAAAATGGTGCTGACCTCTC
AAACTCTTAGGGTAAAAGTTAAGCACATTCATcacattcaaaattgaaat
tgtgGACCTGTGTCGGtgtcatttttgaaaacatgagtGCCAAATGAGTG
CAGTGTTCATGCATCCACTGATCACATTTTTCGCATTGAATCCACTCAGG
CTCATCCTGGCCTCCCTCCCACTGTCTCTTGCACCTCTTACACTCATCTT
GTCCCTCATTCTCACTTCCTGCTTCAATATCACTTCCATCCTCATTATAA
TTTCCTTGGTTGATCATTAGAGCGTAATTGACCTTTTTTCGCTGTCGCTT
TGATCTGTTTGCTGTTGGTTGGTTGGTTGTTGATTGGCTTGTTGTTGGCT
GGTTTTCTTGTTGAATTTTGTTTGTTAATTTTCGTTTTTTCTTTGCCGGT
TTCTTAGATTTGCTTTTCCTTTTTTGTTGTTTTTCCGATTGCTGTTTACA
TTTCAATTCTTGTTTATTTTGTTTGACCATCAGTTTAATTTGTTTTTCTT
CTTCCTTTTGTTGTTTCTTTATATATTGCTCTTCTAACACTTTCAATGCA
TCGTCGGAAGTAAGATGGTATAATGGAGCCTTCTTTTGGGGCATTTTTCT
TTGGAATTTTTGGCATTGTTAGAGCCTCTTTAGTTGAATTTGTTGTTTGG
CACCTTTCTTTGACGAGGTTGAGTAGTTTTGATCTTTCCATTTCTACCCC
CTCTTTCAAAGCATGCCAAGACTTAAACAAAAAGTCATCATTATTAGGTT
TGCACCCATGCTCAAATCTCTTGTTGAACAAAATATATTGGTCTTTTGTC
AACAATTTTTCGAAATGCAAAAGTCCCTTCACTAGCATGGAGTCGTTGAT
GTTTTTAATGGGAGATANAAATGCAAAAGTCCCTTCACTAGCATGGAGTC
GTTGATGTTTTTAATGGGAGATGAAGAAATAATGTTTGTGGTATCCAGTG
TGAAGCTTGTTGGTGGCGTTGAGATGATACAATCGGATGTCGAGGGTAAG
GAACTATTTTGGTTTAAGGTTTGAAAATCAACACTGTTGTCTAGTTGCCC
TGATTCAATAGATGATTGGTAGGTTTTTTCATCTGGTTGGTGTGGATGCT
GCTCTGTACTGTGGGGAATTGGCACTAGACGACGTGGTTGTTCGAGTTGA
TGGTGTGGTTGTTCTGGTTGGCAAGAAGGCAGTTGCTCAGGCTGACGTGA
TAGTTGCTCTGGTTGATGGGGTGGAACAAATGATTCAGCTTGTCCCAGTC
CAAATTTTCTCTATGTAGTGGCCAGATTCCAGTACTCCGAAAGGCACTCA
TTATATTGTTAGGAGTCAGAGCATCGAAATAGGTTCCAGTGAACAATTTT
CCAAAGATGTGCTTGTCAATCACCCGTTTAATGGGTTTCCCAGCATTAAA
TATGTTTGTGTTTGCTTGCCCTAAATAGTTGTCGCACCTTTTGTGGAAAA
ATCCTTTCATTGGCCCGAAAATTCCAATATCGAGCGGCTGGAGTATATGT
GAAGCATGAGAAGGCAGACATAGAAGTTCAATTTCATTTTTCTGGCAATA
TTGGGATGCTTCATAAGTAATGTGGGTACTGTGGCCATCAAAAATTAAAA
GGACTGGTCTTGTTGGTGGAATGCGTCTTAAAGATACTTTTTCGATCAAG
TGGCGAAAGGAAGGTATGGTTATCCATCCTTTAGCAGTGGCCATCGTGTG
GACTAACTGACTTTCCAGGGTGCCAAATGAAGGGCGGTACACGTATATCT
GGATCAGCACCTGAACAAATTTAGACCATTGTCCTTGATGAGAAAAATGT
TTTTATATTGTTCTAAACTACGAAATTTGTGTAGTTTTCAACAAAGTTAA
TCCTTTAGGGAAATTATACAATTTTTTTTTTATTTTACTGGAGTACTCAC
AGGAAAAAATCTTAAAACTCTCAAATAAAAATCTTGCAAAAACTCTCTTC
ACTTCAGTTAAAAACATGTTCAAACTGATAATTACAACTGTTTTTTTTTC
AGGTGAGATGACATGAGATGATACTTACAAATGCATGCAAGACAAGTTAT
TTGGTCTTTCGAACTGTTGATGAGTTTGTACGCATGACGGACACCAAGAC
ATTACCATTGGACTTGTGTTGCAGCGAAAAACCTGACTCATCACAGTTGA
ATATTTGTGAGGCTGACTTTATCCCCCTCTGTTGACATATCTCCTCCAGT
TGGTTGAAGAATGTTTCTAGTTTTTGTTTGCTGCACATAGCTCTGGAAAT
TATCAATTTGCCAGGGCGTGCTAGTTTAAGATTTGGATGTCTTCTTTAAA
TAATTGAAACTACTTTTTTCCGGGATAATTTGAGGCATCAAACTCTGAGC
GACCTGCGAGGTCAAGGATTTGTTTAACTGTCATTCTCACTTGTGTCGGT
GTCTTTCCGCACCCAATTTTCGCCATTGCTTCCAACCACGTCACCAGATC
ATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042743-exon-sc0003644-1491911889:4492..4528 | TCONS_00042743-exon-sc0003644-1491911889:4492..4528 | Clytia hemisphaerica | exon |
| TCONS_00042743-exon-sc0003644-1510915933:4492..4528 | TCONS_00042743-exon-sc0003644-1510915933:4492..4528 | Clytia hemisphaerica | exon |
| TCONS_00042743-exon-sc0003644-1575043694:4492..4528 | TCONS_00042743-exon-sc0003644-1575043694:4492..4528 | Clytia hemisphaerica | exon |
| TCONS_00042743-exon-sc0003644-1491911889:7544..7996 | TCONS_00042743-exon-sc0003644-1491911889:7544..7996 | Clytia hemisphaerica | exon |
| TCONS_00042743-exon-sc0003644-1510915933:7544..7996 | TCONS_00042743-exon-sc0003644-1510915933:7544..7996 | Clytia hemisphaerica | exon |
| TCONS_00042743-exon-sc0003644-1575043694:7544..7996 | TCONS_00042743-exon-sc0003644-1575043694:7544..7996 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003644 | supercontig | sc0003644:4492..7996 + |
Blast
The following BLAST results are available for this feature:
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