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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042830 ID=TCONS_00042830|Name=TCONS_00042830|organism=Clytia hemisphaerica|type=transcript|length=1832bp
TTTTGGCGAAGTTCGGGAACTTTCGGAAGCCTCAAATAGACTGGATTAAA
TATAGAAACAGTTTAGCTTTGCATTTGTACAATTtaggaaaaattttgat
taattttaagGCCTAAAAACTTGGTTACGTCAAACTCCTGCCAGAATAAC
TTGTTTAAGCTGCGATAGTGTCTGTCACCAGATTTGCCTCCAGAATGACT
CTTCTTAGATATGGAGGAGAGCCAATAGCCTTTGGTACGTGTCTTAAGGC
TCGAAGGGGCCCTGAAGGATTTCTTTGTTCTTCGAAAACTTATCTTGTAA
CCAGTCCTACCGTTACCTCGGGAGCCTCTCTAGGTTGTCTGAACGGACGA
TCTCTCGACCCTACAAACCGGATCAACTACTTCCAAATAAAACTATGCAA
ATCCAGTAAAACCATGCTCAATTTTCGTCGGATTTCAAAGTGACGTGTTA
AAGAAACAAAATCAGTGTTgtcttttaaaaatcaaaattccgtAAGGAAG
GTAGCTATGAACTTCAAATAAAGActgattttaatgaatttcaaaggaaC
AAAAGCCTTATATAGGTTACACTTAATTGgtattatttcttattttacat
tgagaaattttcaatgCAACCCTCATTTTGGCACATGAACATATTAAAAA
CAACTTGTCatttcaaaatgtaaaatatagTGAGGCTGCCAATTAGCATA
AATACTGAAGCTGCCAGTTAGCCTTTGTCAATCTTGTTCTAAACTCCCTG
CGTGACAACACCGACTCCCAACAGTCCTAAACTTTGTGGGACACTCGTAT
GTAAGGAATTTGACGTCTTTCGTTCAGATTAAATGCTTAGTGAGGAAGCA
AATGGACTCCAGTCGTTCCGTCATAATTTACACtttgaaaattgagaaat
taCACCCTTGTTGGACGTTTTGGTGAAATTTTAGGACTTTCCAAAGGCCC
AAATAGACTAGGTTAGACATAAAGATACTTTTGTTTTGCTTCTAGACTAG
TTATAATGTTGTTTGATTTATTTCAAGGCCTTTAATCTTTGTTACATCAA
ACTCCCAAGAAACTTTGACAAGTGTCCCAAGGCTCTAAGGGCCCTCGTCA
AAGACTTCCTAAATCAGAAAACTGGTCTTGCCGTGGTACGCCTAGGTTGC
CTTTGATAGGGTTTTCTTGACTGAATTCTTGTTTGCCGGCCCTGCAGACC
GGAACTACTGCCTATCATTAGAACTTTGCGAATCCAGAAAGACTTTTCTC
AGTTCCTGAGGTTAGTCAAGGGCCTGCAAGAGTTGTGTAAAGGCTGATGC
GGGATAGGGAGGCTTTTGATTTATTCGAAAATCATTAGAACTTCAAATGA
CGTgttctaaaaacaaaatcagTGTTGTcttttaaaaatccaaattccTT
AAAAGAGGTAgctaataaattcaaataaGGCCTGGTTTTGATGAATTTAA
AATTAATGAAAGCCTCTTATTTGTTGCTCTTAATagatatatttcatatt
ttacatTCACGAATTTCCAATGCAGCCCTCATTTTGTCACATGAACATAT
TAGACAACTTGCCATTTGAAAGTATTAAATATAGTCAGGCTGCCAATTAG
AATTATTCAATGCCAATTATTCAAGCTGCCAGTTAGCCTTGATTTATTAT
ATTATAAACTACTTGCATGGTTAAGCTGACTCccaaatgttcttaatttt
atgAGATACTTCTATGCAAAGAATTTGACCACTTTCATTCAGATTAAATG
CTTAGTAGGGAAGCTTATAGATTCTAATCGTCCCATTATATTTTGcactt
aaaataataaaaaataatactttACTTTGACC Run BLAST on NCBI transcript from alignment at sc0003710:8517..10348 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042830 ID=TCONS_00042830|Name=TCONS_00042830|organism=Clytia hemisphaerica|type=transcript|length=1832bp|location=Sequence derived from alignment at sc0003710:8517..10348 (Clytia hemisphaerica)
GGTCAAAGTaaagtattattttttattattttaagtgCAAAATATAATGG
GACGATTAGAATCTATAAGCTTCCCTACTAAGCATTTAATCTGAATGAAA
GTGGTCAAATTCTTTGCATAGAAGTATCTcataaaattaagaacatttgg
GAGTCAGCTTAACCATGCAAGTAGTTTATAATATAATAAATCAAGGCTAA
CTGGCAGCTTGAATAATTGGCATTGAATAATTCTAATTGGCAGCCTGACT
ATATTTAATACTTTCAAATGGCAAGTTGTCTAATATGTTCATGTGACAAA
ATGAGGGCTGCATTGGAAATTCGTGAatgtaaaatatgaaatatatctAT
TAAGAGCAACAAATAAGAGGCTTTCATTAATTTTAAATTCATCAAAACCA
GGCCttatttgaatttattagcTACCTCTTTTAAggaatttggattttta
aaagACAACActgattttgtttttagaacACGTCATTTGAAGTTCTAATG
ATTTTCGAATAAATCAAAAGCCTCCCTATCCCGCATCAGCCTTTACACAA
CTCTTGCAGGCCCTTGACTAACCTCAGGAACTGAGAAAAGTCTTTCTGGA
TTCGCAAAGTTCTAATGATAGGCAGTAGTTCCGGTCTGCAGGGCCGGCAA
ACAAGAATTCAGTCAAGAAAACCCTATCAAAGGCAACCTAGGCGTACCAC
GGCAAGACCAGTTTTCTGATTTAGGAAGTCTTTGACGAGGGCCCTTAGAG
CCTTGGGACACTTGTCAAAGTTTCTTGGGAGTTTGATGTAACAAAGATTA
AAGGCCTTGAAATAAATCAAACAACATTATAACTAGTCTAGAAGCAAAAC
AAAAGTATCTTTATGTCTAACCTAGTCTATTTGGGCCTTTGGAAAGTCCT
AAAATTTCACCAAAACGTCCAACAAGGGTGtaatttctcaattttcaaaG
TGTAAATTATGACGGAACGACTGGAGTCCATTTGCTTCCTCACTAAGCAT
TTAATCTGAACGAAAGACGTCAAATTCCTTACATACGAGTGTCCCACAAA
GTTTAGGACTGTTGGGAGTCGGTGTTGTCACGCAGGGAGTTTAGAACAAG
ATTGACAAAGGCTAACTGGCAGCTTCAGTATTTATGCTAATTGGCAGCCT
CActatattttacattttgaaatGACAAGTTGTTTTTAATATGTTCATGT
GCCAAAATGAGGGTTGcattgaaaatttctcaatgtaaaataagaaataa
tacCAATTAAGTGTAACCTATATAAGGCTTTTGttcctttgaaattcatt
aaaatcagTCTTTATTTGAAGTTCATAGCTACCTTCCTTacggaattttg
atttttaaaagacAACACTGATTTTGTTTCTTTAACACGTCACTTTGAAA
TCCGACGAAAATTGAGCATGGTTTTACTGGATTTGCATAGTTTTATTTGG
AAGTAGTTGATCCGGTTTGTAGGGTCGAGAGATCGTCCGTTCAGACAACC
TAGAGAGGCTCCCGAGGTAACGGTAGGACTGGTTACAAGATAAGTTTTCG
AAGAACAAAGAAATCCTTCAGGGCCCCTTCGAGCCTTAAGACACGTACCA
AAGGCTATTGGCTCTCCTCCATATCTAAGAAGAGTCATTCTGGAGGCAAA
TCTGGTGACAGACACTATCGCAGCTTAAACAAGTTATTCTGGCAGGAGTT
TGACGTAACCAAGTTTTTAGGCcttaaaattaatcaaaatttttcctaAA
TTGTACAAATGCAAAGCTAAACTGTTTCTATATTTAATCCAGTCTATTTG
AGGCTTCCGAAAGTTCCCGAACTTCGCCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042830-exon-sc0003710-1491911889:8517..10348 | TCONS_00042830-exon-sc0003710-1491911889:8517..10348 | Clytia hemisphaerica | exon |
| TCONS_00042830-exon-sc0003710-1510915933:8517..10348 | TCONS_00042830-exon-sc0003710-1510915933:8517..10348 | Clytia hemisphaerica | exon |
| TCONS_00042830-exon-sc0003710-1575043694:8517..10348 | TCONS_00042830-exon-sc0003710-1575043694:8517..10348 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003710 | supercontig | sc0003710:8517..10348 . |
Blast
The following BLAST results are available for this feature:
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