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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042835 ID=TCONS_00042835|Name=TCONS_00042835|organism=Clytia hemisphaerica|type=transcript|length=2073bp
cgagcttctaactccttctagatacggagatataagcctttaaagtagta
attctttaaaaaacttaaaatactTTGAAAAGCTATAATGTATAAGGCGC
AAGTTTcaatatatattatatagtGGCTCCTTTTGGTATAGCCGTAGATA
AATGGAGATGACTTAATCGCCGAATAATggaaaagtttctttttgacaTT
ATTGTACTGtaaattctcaataaatttcCTGATGATTACATAAAATTGAG
TATAAGTGAGCTGTCCTCACGAGTCATTCGAGTAAATTTACTATACACAA
GCAGCTCTGTGCAGCCAGTACTATTTTGTAGAGTCAGATATTCTCAGTGA
TTTCCCTATCTTAGGATAATGAATGACGTCCTTTATTAGAAGGAGTATCT
CTCTAATTTTTCCAGCTAATTTACATCTGCAATTTTACCAAGGATATTTT
GAACCATGCCATTACTCAGAAATGTTTCAATGTTTGTTCGTTCACCTAAT
TTATCTGAGAGGGCACCTTGAATTTGAAGAAGTTGTGCAAAAGTCTTAGA
CAGTTGACCCAACTTTCGAAGCTTTTCTGTTACCACTTCAATATCCTGAA
CGCTTGGAATATAATCTTCAATATTTGCAAGGATCTCATTTATTCTTTGC
TCCAATTTGTGCTTCACTTCTCTTGGCATCGTATCCACAATATTAATGGT
TGTCATAAGATAATACGGTGCATCACCACTAGTGATCATAGCATTCAATC
TCCCGAACAATATTTTCAGAGCTTCAACGATGTTTTTCTGTAAACTATCC
GTATTGTCATGCAAGACCCAAAACATGACATTCTTACCTAGAAAAGATGA
AATCGTCGAATCTCCAGGCTTATTCAGTACTTTTATGTGTTTATAAAACA
TAGATTTGAAGATGAAGTAAACCAACTTTTCATTGGTTGATCGCTGTTGA
CAAAgcgatttttcaatttgtgtAAAAGAAACTCGAATGGCACAGCTATC
ATCTCGGTGAGACTTGGTCAGCAGCAAGCAAGCTTCCGTATTGAGACCCT
TTAATACACCCATTTCCGTCCATCTTCTTTCAAAACTCTCCACCTGGTCT
TTAGTATAATCCGACCATTTNaattattattttaacatttgtaaaggaaa
tatttatccgcatctttgcggctcttgtttacCTTTCATTACGATAACAG
TGTCGTAAGAAAATCGCCCTAGAAGCTTCTCTTTTAATTTGATATCCAAG
GTTGTCTCCATTGATGATTTGGTTTGTTCGTGGTTTGTGCGTGGATCAGC
AATGTTGATATCATTAAATGCTGTCAATGCCTCCAAAATAGGTGTAGTAA
AATTTACCCACTCCATTAGCAATGACAGAAAAAGACCCTGAAAAAGACCC
AAACAATTTCACACCTTCTGCAATAGACTGTACAGTAGTCAGTAGTTGCA
GCTTCTTCTCAGCAGCCTCGCTGACCTCCTCCAAAGTTTCATGAAGAGAT
TCAACAGCACGGGTTCCATCAGCAAATTCTTCCAATACATCTTTCACTTT
AATAGAATCTATAAAGCACTTTGCATTCTTTGTGGAGCAAAAAATCTCAT
CAAATGTATTTGCTTTATAATATTGAAGCTTTTCTCTTCGATCTGATAAA
CCTTCAAAATCTAAAGCGTTCTGCAAGCATGATTTCAATTTCTTGGTGAT
GGAATCTGTGTTACCATTAGCCTCTATGGTCACATATCCTGGTTTTCCTT
TAATGTCATTGATTTCGAAACCTTGTAGCTCTTCATCACTGAAATTCAGC
ACCAGATCCATATCTGTTTCAAACTCAAAATTGATTTCATCCTCAAAATC
TTCACACGGATAAAAGAATCTTGGAAGCATGCATCCTTCAGCTGAGCTAC
CTGCCACATCGACTTTTTCGCTAAATTCTTTAAGATCACCATTAACATCG
TATAGATGGATTGCAACCATTTGGATCGCCTCTACAATGATGCCATCCAT
TTTCATGAGtctttcaaataattttatCCGATTCatcttttccatatttt
ttgctttaatgttttgtttttct Run BLAST on NCBI protein sequence of TCONS_00042835-protein >TCONS_00042835-protein ID=TCONS_00042835-protein|Name=TCONS_00042835-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
EKQNIKAKNMEKMNRIKLFERLMKMDGIIVEAIQMVAIHLYDVNGDLKEF
SEKVDVAGSSAEGCMLPRFFYPCEDFEDEINFEFETDMDLVLNFSDEELQ
GFEINDIKGKPGYVTIEANGNTDSITKKLKSCLQNALDFEGLSDRREKLQ
YYKANTFDEIFCSTKNAKCFIDSIKVKDVLEEFADGTRAVESLHETLEEV
SEAAEKKLQLLTTVQSIAEGVKLFGSFSGSFSVIANGVGKFYYTYFGGID
SI Run BLAST on NCBI transcript from alignment at sc0003717:248..2320 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042835 ID=TCONS_00042835|Name=TCONS_00042835|organism=Clytia hemisphaerica|type=transcript|length=2073bp|location=Sequence derived from alignment at sc0003717:248..2320 (Clytia hemisphaerica)
agaaaaacaaaacattaaagcaaaaaatatggaaaagatGAATCGGataa
aattatttgaaagaCTCATGAAAATGGATGGCATCATTGTAGAGGCGATC
CAAATGGTTGCAATCCATCTATACGATGTTAATGGTGATCTTAAAGAATT
TAGCGAAAAAGTCGATGTGGCAGGTAGCTCAGCTGAAGGATGCATGCTTC
CAAGATTCTTTTATCCGTGTGAAGATTTTGAGGATGAAATCAATTTTGAG
TTTGAAACAGATATGGATCTGGTGCTGAATTTCAGTGATGAAGAGCTACA
AGGTTTCGAAATCAATGACATTAAAGGAAAACCAGGATATGTGACCATAG
AGGCTAATGGTAACACAGATTCCATCACCAAGAAATTGAAATCATGCTTG
CAGAACGCTTTAGATTTTGAAGGTTTATCAGATCGAAGAGAAAAGCTTCA
ATATTATAAAGCAAATACATTTGATGAGATTTTTTGCTCCACAAAGAATG
CAAAGTGCTTTATAGATTCTATTAAAGTGAAAGATGTATTGGAAGAATTT
GCTGATGGAACCCGTGCTGTTGAATCTCTTCATGAAACTTTGGAGGAGGT
CAGCGAGGCTGCTGAGAAGAAGCTGCAACTACTGACTACTGTACAGTCTA
TTGCAGAAGGTGTGAAATTGTTTGGGTCTTTTTCAGGGTCTTTTTCTGTC
ATTGCTAATGGAGTGGGTAAATTTTACTACACCTATTTTGGAGGCATTGA
CAGCATTTAATGATATCAACATTGCTGATCCACGCACAAACCACGAACAA
ACCAAATCATCAATGGAGACAACCTTGGATATCAAATTAAAAGAGAAGCT
TCTAGGGCGATTTTCTTACGACACTGTTATCGTAATGAAAGgtaaacaag
agccgcaaagatgcggataaatatttcctttacaaatgttaaaataataa
ttNAAATGGTCGGATTATACTAAAGACCAGGTGGAGAGTTTTGAAAGAAG
ATGGACGGAAATGGGTGTATTAAAGGGTCTCAATACGGAAGCTTGCTTGC
TGCTGACCAAGTCTCACCGAGATGATAGCTGTGCCATTCGAGTTTCTTTT
acacaaattgaaaaatcgcTTTGTCAACAGCGATCAACCAATGAAAAGTT
GGTTTACTTCATCTTCAAATCTATGTTTTATAAACACATAAAAGTACTGA
ATAAGCCTGGAGATTCGACGATTTCATCTTTTCTAGGTAAGAATGTCATG
TTTTGGGTCTTGCATGACAATACGGATAGTTTACAGAAAAACATCGTTGA
AGCTCTGAAAATATTGTTCGGGAGATTGAATGCTATGATCACTAGTGGTG
ATGCACCGTATTATCTTATGACAACCATTAATATTGTGGATACGATGCCA
AGAGAAGTGAAGCACAAATTGGAGCAAAGAATAAATGAGATCCTTGCAAA
TATTGAAGATTATATTCCAAGCGTTCAGGATATTGAAGTGGTAACAGAAA
AGCTTCGAAAGTTGGGTCAACTGTCTAAGACTTTTGCACAACTTCTTCAA
ATTCAAGGTGCCCTCTCAGATAAATTAGGTGAACGAACAAACATTGAAAC
ATTTCTGAGTAATGGCATGGTTCAAAATATCCTTGGTAAAATTGCAGATG
TAAATTAGCTGGAAAAATTAGAGAGATACTCCTTCTAATAAAGGACGTCA
TTCATTATCCTAAGATAGGGAAATCACTGAGAATATCTGACTCTACAAAA
TAGTACTGGCTGCACAGAGCTGCTTGTGTATAGTAAATTTACTCGAATGA
CTCGTGAGGACAGCTCACTTATACTCAATTTTATGTAATCATCAGgaaat
ttattgagaatttaCAGTACAATAAtgtcaaaaagaaacttttccATTAT
TCGGCGATTAAGTCATCTCCATTTATCTACGGCTATACCAAAAGGAGCCa
ctatataatatatattgAAACTTGCGCCTTATACATTATAGCTTTTCAAa
gtattttaagttttttaaagaattactactttaaaggcttatatctccgt
atctagaaggagttagaagctcg Coding sequence (CDS) from alignment at sc0003717:248..2320 >TCONS_00042835 ID=TCONS_00042835|Name=TCONS_00042835|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at sc0003717:248..2320 (Clytia hemisphaerica)
gaaaaacaaaacattaaagcaaaaaatatggaaaagatGAATCGGataaa
attatttgaaagaCTCATGAAAATGGATGGCATCATTGTAGAGGCGATCC
AAATGGTTGCAATCCATCTATACGATGTTAATGGTGATCTTAAAGAATTT
AGCGAAAAAGTCGATGTGGCAGGTAGCTCAGCTGAAGGATGCATGCTTCC
AAGATTCTTTTATCCGTGTGAAGATTTTGAGGATGAAATCAATTTTGAGT
TTGAAACAGATATGGATCTGGTGCTGAATTTCAGTGATGAAGAGCTACAA
GGTTTCGAAATCAATGACATTAAAGGAAAACCAGGATATGTGACCATAGA
GGCTAATGGTAACACAGATTCCATCACCAAGAAATTGAAATCATGCTTGC
AGAACGCTTTAGATTTTGAAGGTTTATCAGATCGAAGAGAAAAGCTTCAA
TATTATAAAGCAAATACATTTGATGAGATTTTTTGCTCCACAAAGAATGC
AAAGTGCTTTATAGATTCTATTAAAGTGAAAGATGTATTGGAAGAATTTG
CTGATGGAACCCGTGCTGTTGAATCTCTTCATGAAACTTTGGAGGAGGTC
AGCGAGGCTGCTGAGAAGAAGCTGCAACTACTGACTACTGTACAGTCTAT
TGCAGAAGGTGTGAAATTGTTTGGGTCTTTTTCAGGGTCTTTTTCTGTCA
TTGCTAATGGAGTGGGTAAATTTTACTACACCTATTTTGGAGGCATTGAC
AGCATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042835-exon-sc0003717-1491911889:248..2320 | TCONS_00042835-exon-sc0003717-1491911889:248..2320 | Clytia hemisphaerica | exon |
| TCONS_00042835-exon-sc0003717-1510915933:248..2320 | TCONS_00042835-exon-sc0003717-1510915933:248..2320 | Clytia hemisphaerica | exon |
| TCONS_00042835-exon-sc0003717-1575043694:248..2320 | TCONS_00042835-exon-sc0003717-1575043694:248..2320 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003717 | supercontig | sc0003717:248..2320 . |
Blast
The following BLAST results are available for this feature:
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