TCONS_00042837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042837
Unique NameTCONS_00042837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042837 ID=TCONS_00042837|Name=TCONS_00042837|organism=Clytia hemisphaerica|type=transcript|length=466bp
GTCCGGACACCGTAGCAACTCTAGTCACCAGGGACTGGAATGAACTCCAC
ACTAAACTAAAAATCACAGActttaaatcaatttctaaGTCTACCTTTAA
GTCACACCTACAACGTTATCTATTAACTAAACTTGCTGAATCTTGGTTCT
GACCTACCCCCCCCCTCCCCTCCAATAAATAACCCATTTTCTCTTCCTCG
GTTTTCTATCTTTCCATTTCTCACTCCTTCCTTCTTCCTTTTCTCTTCAT
ATCTTCGTCTTCTGATACCTTGTCTCGTTCAGAACAGTACCATCTCCCTG
CATTTGTTTGCACTTGTGAATACTAAACCTTAGGTTACTCCGAGTCCACT
GGTTCTCTGGACTACTCTTCGTGTGTTTCCCTTCCGTTTTCTCATTCACT
GACTACTAAACTAATTAGGGAAATATTactttacttatttttatcaGCAC
ATAGTATTATTAGTAC
Run BLAST on NCBI

transcript from alignment at sc0003723:4636..5101

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042837 ID=TCONS_00042837|Name=TCONS_00042837|organism=Clytia hemisphaerica|type=transcript|length=466bp|location=Sequence derived from alignment at sc0003723:4636..5101 (Clytia hemisphaerica)
GTACTAATAATACTATGTGCtgataaaaataagtaaagtAATATTTCCCT
AATTAGTTTAGTAGTCAGTGAATGAGAAAACGGAAGGGAAACACACGAAG
AGTAGTCCAGAGAACCAGTGGACTCGGAGTAACCTAAGGTTTAGTATTCA
CAAGTGCAAACAAATGCAGGGAGATGGTACTGTTCTGAACGAGACAAGGT
ATCAGAAGACGAAGATATGAAGAGAAAAGGAAGAAGGAAGGAGTGAGAAA
TGGAAAGATAGAAAACCGAGGAAGAGAAAATGGGTTATTTATTGGAGGGG
AGGGGGGGGGTAGGTCAGAACCAAGATTCAGCAAGTTTAGTTAATAGATA
ACGTTGTAGGTGTGACTTAAAGGTAGACttagaaattgatttaaagTCTG
TGATTTTTAGTTTAGTGTGGAGTTCATTCCAGTCCCTGGTGACTAGAGTT
GCTACGGTGTCCGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026629XLOC_026629Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042837-exon-sc0003723-1491911889:4636..5101TCONS_00042837-exon-sc0003723-1491911889:4636..5101Clytia hemisphaericaexon
TCONS_00042837-exon-sc0003723-1510915933:4636..5101TCONS_00042837-exon-sc0003723-1510915933:4636..5101Clytia hemisphaericaexon
TCONS_00042837-exon-sc0003723-1575043694:4636..5101TCONS_00042837-exon-sc0003723-1575043694:4636..5101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003723supercontigsc0003723:4636..5101 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.243242	0.461164	0.354197	0	0.290075	0.188404	0.6033	1.27214	0.570719	1.08777	1.68443	0.871792	1.51781	0.877559	0.338589	0	0.136358	0.257716	0	0.287636	0	0.35453	0	0.156049	3.98141	2.88808	0.287754	0.920508	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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