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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042846 ID=TCONS_00042846|Name=TCONS_00042846|organism=Clytia hemisphaerica|type=transcript|length=733bp
NAGCTGGGTTGACACGGtcaagaaaaatagaatttctgaTGCGGTTCTTA
AGATAATGGGAAAAGTGATGGTTGGTTGGACCAATTTTGGAGCGAACAGT
CTCTTCTGCAATGGATGTAAAAAAGTCATTGAAGCCATTGGCAACAACTT
CTGGATCTGAGGTAAGATGACCATTAACACGAATAGACGNNTAAGAGTAA
CTATGAGGTTTTTGTAAGTTTTGTATCgttgataataaaaagttttcatA
ATTGGGTCTTTGGTTTTGATATATTTCCTTGAGTAATATTGACGTTGAGA
AATTGATTTGATAATCCCAAGGGTGATCCATGGTTTAGCTCTGGTTTTTT
GTTGGCGTTTTGTCACAATTACAGTTGGAACATGTTGATCAATTAGGTCT
TGAATTAGATCATAGAATGTTTTGAAAGCTTGATCAACATCTGTTATGTG
ATATAATTTGTTTGCCCAATCAGTGCCAAGAAAGTCTAGGATAAAattat
tttggtcaaaatttttccaatctttCCTAGAAGTTTTACCAGGCTTTGGT
TTGTTAGAAGAACCACAGATAAGGTGAAATTGGGGAAGATGATCAGAGAT
GGAATAAAGCAGATTACCTGAGAAACTGTGTTTTTCAGAAATTAAGGAAA
AGATATTATCAATAAGTGTCATAGAGTGGTCAGTAATACGAGTAGGAAGG
AAAATATTAGGTATAAGAAAGTGTGATCCAAAG Run BLAST on NCBI protein sequence of TCONS_00042846-protein >TCONS_00042846-protein ID=TCONS_00042846-protein|Name=TCONS_00042846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
FGSHFLIPNIFLPTRITDHSMTLIDNIFSLISEKHSFSGNLLYSISDHLP
QFHLICGSSNKPKPGKTSRKDWKNFDQNNFILDFLGTDWANKLYHITDVD
QAFKTFYDLIQDLIDQHVPTVIVTKRQQKTRAKPWITLGIIKSISQRQYY
SRKYIKTKDPIMKTFYYQRYKTYKNLIVTLXRLFVLMVILPQIQKLLPMA
SMTFLHPLQKRLFAPKLVQPTITFPIILRTASEILFFLTVSTQX Run BLAST on NCBI transcript from alignment at sc0003732:3..735 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042846 ID=TCONS_00042846|Name=TCONS_00042846|organism=Clytia hemisphaerica|type=transcript|length=733bp|location=Sequence derived from alignment at sc0003732:3..735 (Clytia hemisphaerica)
CTTTGGATCACACTTTCTTATACCTAATATTTTCCTTCCTACTCGTATTA
CTGACCACTCTATGACACTTATTGATAATATCTTTTCCTTAATTTCTGAA
AAACACAGTTTCTCAGGTAATCTGCTTTATTCCATCTCTGATCATCTTCC
CCAATTTCACCTTATCTGTGGTTCTTCTAACAAACCAAAGCCTGGTAAAA
CTTCTAGGaaagattggaaaaattttgaccaaaataatTTTATCCTAGAC
TTTCTTGGCACTGATTGGGCAAACAAATTATATCACATAACAGATGTTGA
TCAAGCTTTCAAAACATTCTATGATCTAATTCAAGACCTAATTGATCAAC
ATGTTCCAACTGTAATTGTGACAAAACGCCAACAAAAAACCAGAGCTAAA
CCATGGATCACCCTTGGGATTATCAAATCAATTTCTCAACGTCAATATTA
CTCAAGGAAATATATCAAAACCAAAGACCCAATTatgaaaactttttatt
atcaacGATACAAAACTTACAAAAACCTCATAGTTACTCTTANNCGTCTA
TTCGTGTTAATGGTCATCTTACCTCAGATCCAGAAGTTGTTGCCAATGGC
TTCAATGACTTTTTTACATCCATTGCAGAAGAGACTGTTCGCTCCAAAAT
TGGTCCAACCAACCATCACTTTTCCCATTATCTTAAGAACCGCAtcagaa
attctatttttcttgaCCGTGTCAACCCAGCTN Coding sequence (CDS) from alignment at sc0003732:3..735 >TCONS_00042846 ID=TCONS_00042846|Name=TCONS_00042846|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0003732:3..735 (Clytia hemisphaerica)
TTTGGATCACACTTTCTTATACCTAATATTTTCCTTCCTACTCGTATTAC
TGACCACTCTATGACACTTATTGATAATATCTTTTCCTTAATTTCTGAAA
AACACAGTTTCTCAGGTAATCTGCTTTATTCCATCTCTGATCATCTTCCC
CAATTTCACCTTATCTGTGGTTCTTCTAACAAACCAAAGCCTGGTAAAAC
TTCTAGGaaagattggaaaaattttgaccaaaataatTTTATCCTAGACT
TTCTTGGCACTGATTGGGCAAACAAATTATATCACATAACAGATGTTGAT
CAAGCTTTCAAAACATTCTATGATCTAATTCAAGACCTAATTGATCAACA
TGTTCCAACTGTAATTGTGACAAAACGCCAACAAAAAACCAGAGCTAAAC
CATGGATCACCCTTGGGATTATCAAATCAATTTCTCAACGTCAATATTAC
TCAAGGAAATATATCAAAACCAAAGACCCAATTatgaaaactttttatta
tcaacGATACAAAACTTACAAAAACCTCATAGTTACTCTTANNCGTCTAT
TCGTGTTAATGGTCATCTTACCTCAGATCCAGAAGTTGTTGCCAATGGCT
TCAATGACTTTTTTACATCCATTGCAGAAGAGACTGTTCGCTCCAAAATT
GGTCCAACCAACCATCACTTTTCCCATTATCTTAAGAACCGCAtcagaaa
ttctatttttcttgaCCGTGTCAACCCAGCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042846-exon-sc0003732-1491911889:3..735 | TCONS_00042846-exon-sc0003732-1491911889:3..735 | Clytia hemisphaerica | exon |
| TCONS_00042846-exon-sc0003732-1510915933:3..735 | TCONS_00042846-exon-sc0003732-1510915933:3..735 | Clytia hemisphaerica | exon |
| TCONS_00042846-exon-sc0003732-1575043694:3..735 | TCONS_00042846-exon-sc0003732-1575043694:3..735 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003732 | supercontig | sc0003732:3..735 . |
Blast
The following BLAST results are available for this feature:
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