TCONS_00042852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042852
Unique NameTCONS_00042852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042852 ID=TCONS_00042852|Name=TCONS_00042852|organism=Clytia hemisphaerica|type=transcript|length=699bp
CGAATAAAGCGGAAAGCGAATATGAACCAGATAGTATTTACACCAGGTTT
TGAgaatcaattattattattttggagacattattttcgattttgcaata
agttttttgaaaaatgaaaacaaccattcaaaaaaaaaaaaaatgaattt
acggGCGTTAGAACGAATAAAGCGGAAAGCGAATATGAACCAGATAGTAT
TTACACCAGGTTTTGAgaatcaattattattattttggagacattatttt
cgattttgcaataagttttttgaaaaatgaaaacaaccattcaaaaaatg
aatttacggGCGTTAGAGCGAATAAAACGGATAGCGTAGATGAACCAGAT
GGTATTTACACCAGGTTTCGAGAATCAATTATATTTTGGAGACattattt
tcgattttgcaataagtttttgaaaaattaaaacaaccattcaaaaaatg
aatttacggGCGTTAGAGCGAATAAAGCGGATAACGTAGATGAACCAGAT
GGTATTTACACCAGGTTTCGAGAATCAATTATATATTGGAGACATTATTT
TCGATTTTGCaataagttttttgaaaaattaaaacaaccattcaaaaatt
gaatttacgGGCGTTAGAACGAATAAAGCGGAAAGCGAATATGAACCAGA
TAGTATTTACACCAGGTTTTGAgaatcaattattattattttggagACA
Run BLAST on NCBI

transcript from alignment at sc0003734:1510..2648-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042852 ID=TCONS_00042852|Name=TCONS_00042852|organism=Clytia hemisphaerica|type=transcript|length=1139bp|location=Sequence derived from alignment at sc0003734:1510..2648- (Clytia hemisphaerica)
CGAATAAAGCGGAAAGCGAATATGAACCAGATAGTATTTACACCAGGTTT
TGAGAATCAATTATTATTATTTTGGAGACATTATTTTCGATTTTGCAATA
AGTTTTTTGAAAAATGAAAACAACCATTCAAAAAAAAAAAAAATGAATTT
ACGGGCGTTAGAACGAATAAAGCGGAAAGCGAATATGAACCAGATAGTAT
TTACACCAGGTTTTGAGAATCAATTATTATTATTTTGGAGACATTATTTT
CGATTTTGCAATAAGTTTTTTGAAAAATGAAAACAACCATTCAAAAAATG
AATTTACGGGCGTTAGAGCGAATAAAACGGATAGCGTAGATGAACCAGAT
GGTATTTACACCAGGTTTCGAGAATCAATTATATTTTGGAGACATTATTT
TCGATTTTGCAATAAGTTTTTGAAAAATTANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGGGCGTTAG
AGCGAATAAAGCGGATAGCGTAGATGAACCAGATGGTATTTACACCAGGT
TTCGAGAATCAATTATTATTTTGGAGACATTATTTTCGATTTTGCGATAA
ATTTTTTGAAAAATGAAAACAACCATTCAAAAATTGAATTCACGGGCGTT
AGAACGAATAAAGCGGAAAGCGAATATGAACCAGATAGTATTTACACCAG
GTTTCGAGAATCAATTATTATTATTTTGGAGACATTATTTTCGATTTTGC
AATAAGTTTTTGAAAAATTAAAACAACCATTCAAAAAATGAATTTACGGG
CGTTAGAGCGAATAAAGCGGATAACGTAGATGAACCAGATGGTATTTACA
CCAGGTTTCGAGAATCAATTATATATTGGAGACATTATTTTCGATTTTGC
AATAAGTTTTTTGAAAAATTAAAACAACCATTCAAAAATTGAATTTACGG
GCGTTAGAACGAATAAAGCGGAAAGCGAATATGAACCAGATAGTATTTAC
ACCAGGTTTTGAGAATCAATTATTATTATTTTGGAGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026639XLOC_026639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042852-exon-sc0003734-1575043694:2256..2648TCONS_00042852-exon-sc0003734-1575043694:2256..2648Clytia hemisphaericaexon
TCONS_00042852-exon-sc0003734-1575043694:1510..1815TCONS_00042852-exon-sc0003734-1575043694:1510..1815Clytia hemisphaericaexon
TCONS_00042852-exon-sc0003734-1510915933:2256..2648TCONS_00042852-exon-sc0003734-1510915933:2256..2648Clytia hemisphaericaexon
TCONS_00042852-exon-sc0003734-1510915933:1510..1815TCONS_00042852-exon-sc0003734-1510915933:1510..1815Clytia hemisphaericaexon
TCONS_00042852-exon-sc0003734-1491911889:2256..2648TCONS_00042852-exon-sc0003734-1491911889:2256..2648Clytia hemisphaericaexon
TCONS_00042852-exon-sc0003734-1491911889:1510..1815TCONS_00042852-exon-sc0003734-1491911889:1510..1815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003734supercontigsc0003734:1510..2648 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.2302	18.6965	6.30867	3.33004	0.19528	0.385783	3.54722	4.3499	6.78779	6.31326	3.58687	2.2688	1.09208	1.26138	0.572147	0.529983	1.35941	1.87245	1.00411	0.267955	3.90928	3.46197	3.93108	3.76939	1.79559	3.32201	1.30782	1.49157	3.45234	2.25765
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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