TCONS_00042855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042855
Unique NameTCONS_00042855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042855 ID=TCONS_00042855|Name=TCONS_00042855|organism=Clytia hemisphaerica|type=transcript|length=580bp
CACAACTATATGAACTCGTCAGATTATTTTAGCGACGAAAAGATTGGTAA
ACTAGATGAAGCCATCAAAGACTTAATGACGTACTATCGTACAGGATTTC
CTGAAGAGACAATAACACCAAAATTGCACATGTTGGAACATCATGTTTTG
GACTTTATCAAGAGATGGAGGATTGGGCTTGGAATGTATGCTGAGCAAGG
GGCAGAAAGTATACATCCTGAATTTAATGCTCTAATAAAAAGATTTGCAG
GCATGAACTCTGACGAGGAACGAATTCGCAGTATTTTTGGTGAACATCAT
ACAAAAGTTCGACCGCAAGCAAAAATCTTGGCCCCTGAAATCGAAAAAAG
AAATTTTAAAGTGCCAAGAGAAGAATAAAAACTCACCTTTGTTTTGAGGT
ATCCAATTAGAACAGTTTATGAGATGATTCAAGTTGCATTTTCCACTGAA
CAATGTTCCAGATGTCCAGCTGTTCCCATGATATGTTTGCGAAAATTTGT
ACAAGTTGACCTACTTTAACATTCCATTTCTTGTTTCTCTAGAGTTGACA
GGAATTTAAGTTTGGTGTTTTTGGAAGCCA
Run BLAST on NCBI

protein sequence of TCONS_00042855-protein

>TCONS_00042855-protein ID=TCONS_00042855-protein|Name=TCONS_00042855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
HNYMNSSDYFSDEKIGKLDEAIKDLMTYYRTGFPEETITPKLHMLEHHVL
DFIKRWRIGLGMYAEQGAESIHPEFNALIKRFAGMNSDEERIRSIFGEHH
TKVRPQAKILAPEIEKRNFKVPREE
Run BLAST on NCBI

transcript from alignment at sc0003736:3685..4410+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042855 ID=TCONS_00042855|Name=TCONS_00042855|organism=Clytia hemisphaerica|type=transcript|length=726bp|location=Sequence derived from alignment at sc0003736:3685..4410+ (Clytia hemisphaerica)
CACAACTATATGAACTCGTCAGATTATTTTAGCGACGAAAAGATTGGTAA
ACTAGGTGAGTATATTTCAAAACTTAGGAAAGACTACTTGAGGATGAAAA
TATACCTGAGAATGACAAAATCTACATAAGGTATTAGGTAGGTAGATACT
TACATTATTTGAATCAGTATGTAATCTCTTTGTTGTTTGTGTGTTTCATA
GATGAAGCCATCAAAGACTTAATGACGTACTATCGTACAGGATTTCCTGA
AGAGACAATAACACCAAAATTGCACATGTTGGAACATCATGTTTTGGACT
TTATCAAGAGATGGAGGATTGGGCTTGGAATGTATGCTGAGCAAGGGGCA
GAAAGTATACATCCTGAATTTAATGCTCTAATAAAAAGATTTGCAGGCAT
GAACTCTGACGAGGAACGAATTCGCAGTATTTTTGGTGAACATCATACAA
AAGTTCGACCGCAAGCAAAAATCTTGGCCCCTGAAATCGAAAAAAGAAAT
TTTAAAGTGCCAAGAGAAGAATAAAAACTCACCTTTGTTTTGAGGTATCC
AATTAGAACAGTTTATGAGATGATTCAAGTTGCATTTTCCACTGAACAAT
GTTCCAGATGTCCAGCTGTTCCCATGATATGTTTGCGAAAATTTGTACAA
GTTGACCTACTTTAACATTCCATTTCTTGTTTCTCTAGAGTTGACAGGAA
TTTAAGTTTGGTGTTTTTGGAAGCCA

Coding sequence (CDS) from alignment at sc0003736:3685..4410+

>TCONS_00042855 ID=TCONS_00042855|Name=TCONS_00042855|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at sc0003736:3685..4410+ (Clytia hemisphaerica)
CACAACTATATGAACTCGTCAGATTATTTTAGCGACGAAAAGATTGGTAA
ACTAGATGAAGCCATCAAAGACTTAATGACGTACTATCGTACAGGATTTC
CTGAAGAGACAATAACACCAAAATTGCACATGTTGGAACATCATGTTTTG
GACTTTATCAAGAGATGGAGGATTGGGCTTGGAATGTATGCTGAGCAAGG
GGCAGAAAGTATACATCCTGAATTTAATGCTCTAATAAAAAGATTTGCAG
GCATGAACTCTGACGAGGAACGAATTCGCAGTATTTTTGGTGAACATCAT
ACAAAAGTTCGACCGCAAGCAAAAATCTTGGCCCCTGAAATCGAAAAAAG
AAATTTTAAAGTGCCAAGAGAAGAATAACACAACTATATGAACTCGTCAG
ATTATTTTAGCGACGAAAAGATTGGTAAACTAGATGAAGCCATCAAAGAC
TTAATGACGTACTATCGTACAGGATTTCCTGAAGAGACAATAACACCAAA
ATTGCACATGTTGGAACATCATGTTTTGGACTTTATCAAGAGATGGAGGA
TTGGGCTTGGAATGTATGCTGAGCAAGGGGCAGAAAGTATACATCCTGAA
TTTAATGCTCTAATAAAAAGATTTGCAGGCATGAACTCTGACGAGGAACG
AATTCGCAGTATTTTTGGTGAACATCATACAAAAGTTCGACCGCAAGCAA
AAATCTTGGCCCCTGAAATCGAAAAAAGAAATTTTAAAGTGCCAAGAGAA
GAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026641XLOC_026641Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042855-proteinTCONS_00042855-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042855-exon-sc0003736-1491911889:3685..3739TCONS_00042855-exon-sc0003736-1491911889:3685..3739Clytia hemisphaericaexon
TCONS_00042855-exon-sc0003736-1510915933:3685..3739TCONS_00042855-exon-sc0003736-1510915933:3685..3739Clytia hemisphaericaexon
TCONS_00042855-exon-sc0003736-1575043694:3685..3739TCONS_00042855-exon-sc0003736-1575043694:3685..3739Clytia hemisphaericaexon
TCONS_00042855-exon-sc0003736-1491911889:3886..4410TCONS_00042855-exon-sc0003736-1491911889:3886..4410Clytia hemisphaericaexon
TCONS_00042855-exon-sc0003736-1510915933:3886..4410TCONS_00042855-exon-sc0003736-1510915933:3886..4410Clytia hemisphaericaexon
TCONS_00042855-exon-sc0003736-1575043694:3886..4410TCONS_00042855-exon-sc0003736-1575043694:3886..4410Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003736supercontigsc0003736:3685..4410 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.254564	0.228713	0.126884	0.156967	0.434688	0.201053	0.745505	0.555567	0.678852	0.277867	0.792549	1.56674	0.316921	1.39553	1.62953	2.044	1.13809	1.99194	2.15445	1.92649	4.35095	1.24114	0.544315	1.58051	0.308013	0.10738	2.48963	2.82751	0.897595	0.336797
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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