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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042856 ID=TCONS_00042856|Name=TCONS_00042856|organism=Clytia hemisphaerica|type=transcript|length=1492bp
ATTTGATCGTTTATGGAACGCCCGCGGAAGAAGGGGGCGGTGGAAAGTGT
TTGATGATCGAGAAAGGCGTTTTTAATGAAGTAGACATTTGCATGATGAC
CCACCCATCGCCTTACGAATTACCAAGCCCCTCTTCACTTGGTGTCGCCC
AATACAAAATCGTTTTCAAAGGCAAAACAGCACACGCAGCAGCGGCGCCA
TGGGAAGGAATCAACGCATTAGATGCCGCTGTAGCATGTTATAATAACGT
TAGCATGTTACGACAACAAATGAAACCAACTAATCGTATTCATTGCACTA
TTGTGGATGGAGGAGAAAGACCCAATATCATCCCTGAACGCGCGGAATTG
TTCTATTTCGTTCGCGCGCAAACTGATAAAGAAGTTACAGGTTTAGTCGA
ACGACTCAGAGCGTGTGCTGAAGGAGCAGCCCAGGCTACAGGCTGTACTA
TGGAGATGTTTGAATCAAGTCCTTACTTCGCTGCTGTCAATACAAATCAA
GTCATGATCGATCTTTACATCGAAAACGCAAAATCACTTGGCGTTCCTTT
TGAAGATGATAGCATGAGAGACATATTGCAAGCTTCGACAGATATGGGAA
ATGTATCAGCAATGAAACCATCTATACACCCTATATATAAAATAAAATCG
GAAGAAACAAACCATAACCATGGCTTTACAAAAGCCGCTGGATCTGCGGA
AAGTCAGTTACCCACATTGAATTCAGCAAAGAGTATGGCAATGACCGCTA
TTGATATCGTTTGCGAGGAAGGACTTTCAGAAAAGGTTCAGAAAAGCTTC
GAAGATTCCTTACTGTAGGCTCATTGAAATGGAACAGTTGATTTACAATT
TGTGGGTATTGGTGTATTAGGTTTTACAGGAATATCTTTTAACCTTGTTT
CACATTTNTTTAGAAAAGGTTCAGAAAAGCTTCGAAGATTCCTTACTGTA
GGCTCATTGAAATGGAACAGTTGATTTACAATTTGTGGGTATTGGTGTAT
TAGGTTTTATAGGAATATCTTTTAACCTTGTTTCACATTCATATATTACA
TTTCTGAAGTATTGTCTAAAAAAATGGTCTCgaataaaataataaatgat
TAAAGTAATACTGCGTTGGAAAGATAGTTCCAACTGAggcttttctttta
aattgtaTTGTACAAGGTTTCCTTTAGCCAGGGTTTCCTTTAATGTATTA
AAATGTGACCATTGCCATTTTTGGCTGGAACAGACTTTGACTAAATcttc
tttctatttattttttcccacaTTCCATTTACAATTTGTAAACAGCATAC
ACAACAGCAGTCACAAAGAAATGTCCATAATCAATCGTTAACTCTGTAAA
ATCGTCATTTTCTTTATCCATCAAAGTTCTACTGGCAATCGAAGTTCCTT
GATGTAAATTTTGACCTACGTGAACCATCGAGACGATCCGATAACGACTG
AATCCAAGATGTTTGACTTTCTCTTTGATGGAATTACTTGCA Run BLAST on NCBI transcript from alignment at sc0003737:5149..10538+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042856 ID=TCONS_00042856|Name=TCONS_00042856|organism=Clytia hemisphaerica|type=transcript|length=5390bp|location=Sequence derived from alignment at sc0003737:5149..10538+ (Clytia hemisphaerica)
ATTTGATCGTTTATGGAACGCCCGCGGAAGAAGGGGGCGGTGGAAAGTGT
TTGATGATCGAGAAAGGCGTTTTTAATGAAGTAGACATTTGCATGATGAC
CCACCCATCGCCTTACGAATTACCAAGCCCCTCTTCACTTGGTGTCGCCC
AATACAAAATCGTTTTCAAAGGTAAGGTTCTGTTGAATGAAAACATGGAT
AAAAGAAGATTTACAGATACAATTTTATTACGGATCATCTGATAATGACT
CATGAAAATTCTTGTATTGATCATGATCTTTAAATTTTATTTGGAAGCCG
AATTATAATGAAAATGCAAAAAAACTTGGTGTTGGTTTTGAAGATGACCA
TATGAGAGAAACATATGGCCGAAGCACTCATTTGTGGGAAAATTGAATTC
ACAAGGGATTGAAAGTCTCTCGAACGCAAGATTATACGTTATAACCTTTC
TCATTTCACATTTTCTCTCTCCTCAGGCAAAACAGCACACGCAGCAGCGG
CGCCATGGGAAGGAATCAACGCATTAGATGCCGCTGTAGCATGTTATAAT
AACGTTAGCATGTTACGACAACAAATGAAACCAACTAATCGTATTCATTG
CACTATTGTGGATGGAGGAGAAAGACCCAATATCATCCCTGAACGCGCGG
AATTGTTCTATTTCGTTCGCGCGCAAACTGATAAAGAAGTTACAGGTTTA
GTCGAACGACTCAGAGCGTGTGCTGAAGGAGCAGCCCAGGCTACAGGTTT
GAATTTATCTTTTAATCCCCCTGAAAAGTTTTATCGATAGAATTAACCTT
TCCTATTCGTGTTTTTTGATTTCTAATTTCAGTTCAGCTCAATTTTGACA
ATACTTGAGTGTTTGTTTGTCTATCTGTCCGCCTGTCTGGAGCAATGTGA
AAGTAAATAATGATTTTTGGGCAATGACGACgagtttttcaacatttaaa
atTTGGAATAGTGTGGAGATTTTAAATAATGTCagattttttccttaaaa
aatacctaaaattttgaatttgaatgccAAAAAATGGTTTTTAGTTTTAG
AAATTATAGAAATTATTGTTCAGAGGAAAGTTCTCTCTCTAAATTTTCAC
AGGCTGTACAATGGACATGAAGCAAAGTGCGCCCTCTTGGTCTGCTGTCA
ACACAAATCAAGTCATGATCGATCTTTACATCGAAAATGCAAAATCGCTT
GGCGTTCCTTTTGAAGACGACCATATGAGAGAAACATTCCAAGCGGCAAC
AGATATGGGAAACGTTTCAGTTGTAAAACCGTCCATTCATCCTTATTACA
AAATACAAACAGAAGAGATAAACCACAACCATGGATTTACAAAAGCCGCT
GGATCTGCAGAAAGTCAGTTACCAACATTGAATACTGCAAAGAGTATGGC
AATGACCGTTATTGATATCGTTTGTGAGGAAGGACTTTTACAAAAGGTTC
AGAAAGGTTTTAAAGAATCTTTACTTTCGTGATGGAATATAACGAACATG
TGATTGCTAAGCTTCCAAAAACACAGATATTCAGTtgtctctctctaatt
caatcttcaagggacaaacaaagaaagaattttctcaattagggaaagat
tcgaattacagagagtatttaATACGATTTTTCAGTTGAGGGGGCTAATA
GTTTAGttcgaattactttttcaaatgaGAGAGAGTTTACTGTTCACTGT
ATCTATTTGTCATGTTTTTGTCCACTTGTAATAGTAAACTTGTAAATTTT
TAACTTGCATTTTTTCACACATCCAATTTCATACACCACTCACGGgtaat
ttatgaattttctatcatataaaaagcgacaaaagtaatatttttgcaac
gttttttaataaaataaatcttttaattttcgaaaaattattatTGTTGT
ACTAAAATTTGTAATTTGTTTGAATGTGAAAGAATAGTACATTAAcacta
aatttcaattttacagCAAATTTAGCTCTTATTGATTGGcttaaatttat
ttgaaaacttttataaGAAAGCTTCAATGTTATCTTGTCCGTTTTTNAGA
TTGGcttaaatttatttgaaaatttttataagaaagctTCAATGTTATCT
TTgcccgtttttttttttcagggtagaaaatgaaagaaaaattgaaacag
atcATTTGCGAAGCCATAGACTCCAAGAAAGATGAACTAAACAATATCAG
TcaagaaatttggaaaaatcctgagttgaatttcaaagaatttAAAGCGC
ATGCTTTGCTGACGTCATATCTCGAGAAAGAAGGGTTTGAAGTATCAAAG
AGCACTCCTTTGGAAACTTCATTTATTGCTCGTTATGGTAAAAAAGAAGG
AATCAAAGTTGGAGTGATTTGTGAATATGATGCATTACCTGGAGTTGGAC
ATGCTTGCGGTCATAATTTGATCGCTGAAGCAGGAATCGGAGCAGCTTTA
GGTAGGGAATACAGGTTCAACAATACCATATTCAAATAACTGAtcagaaa
agtttgaaaacatCTTTTCACCCACCATTCAAAGTTATGATCACCAGGGT
AACTAGTAAATGTTTGGGAAAAGAGGTGACGATACAGCCTTAAAGCCATG
AAGTATGTCTTAAAAGTATGTGAACACTTtaccttttcaacattttctAA
GCACCCACTCATGCTATGTTAAAAAGGTATGTACAGTTGGAAAGGTATTT
TTGAGGAGAATGCTATAATATAATAAAGAATtcggaaaaaagaaaattaa
atgaaaatttttctactGGTTTAACATTCACAAAAGAGCACTTTTTAGAA
TATTTAAACCTTTCTGATTCCAAAACTCAATTCAGATTTTTGGTATGATA
CTTACTTTGGACCAAAGTTGGGTATAATGGTCAAAACTCATCCgaaatag
caaaaaaaacctAGTTTTTGTGCCATTTTATCAAACCagtagaaaatata
ttttctttttacttttatttttcttcttcactgtcaatttttcaagaaat
tttaatcaaTGGATTGTGAATTGATAAGCTGATGAATATTCTTTATATCT
TTTTCCCTACTCCAGGATTGAAATCAGTGATTGATTCAAAACCTGATTGC
AATTTCCACTTGATCGTTTATGGCACGCCAGCGGAAGAAGGGGgcggtgg
aaaatgtttgatgaTCGAAAAAGGCGTTTTTGATGAAGCAGATATTTGCA
TGATGAGTCATCCTGCGCCATATGAAATTCCGAGCCCTTCTTGGCTTGGT
GTTGCCCAATACAGAATCGTTTTCAAAGGTAGCATTTTTTTATGGTAATA
AAtatctattttttatataaaactaAACTTAGGCCTACAGCTTAAGTGCC
AATCGTCCATAAATGTATTTTTATCCGATTAGTACTAAAATGACGAATAA
TTTACAATACTAACTAATGACTGGGCAATAACATTTGAATTTTTCTGCAC
GTGTAAATACGTGATAATACATTAGAATATCTCATTCTTACGAAGAAAAT
CTTCCAaatctatatttttatattttacttaTAATTAATGTATTCTTTTC
TCTCCTCAGGCAAAACAGCACACGCAGCAGCGGCGCCATGGGAAGGAATG
AACGCATTAGATGCCGCTGTAGCATGTTATAATAACGTTAGCATGTTACG
ACAACAAATGAAACCAACTAATCGTATTCATTGCACTATTGTGGATGGAG
GAGAAAGACCAAATATCATTCCTGAACGCGCcgaaatgttttattttgtt
cgCGCGCAAACTGATAAAGAAGTCGCGAGTATGGTCGAACGACTCAGAGC
GTGCGCTGAAGGAGCAGCCCAGTCTACAGGTTAGAAATTTCTCTCTTACT
TGATGAACCAGCTTTTGTAGATTTCACTGCTATAATCTGTATGATCAAGC
AACTTCCCAGGGGCTANCAGGTTAGAAATTTCTCTCTTACTTGATGAACC
AGCTTTTGTAGATTTCACTGCTATAATCTGTATGATCAAGCAACTTCCCA
GGGGCTACTTTGACACAATTGatgtcgggtatgtgcgtgccatACGGGTC
CTATTTTTaaaccctcgaaagtctctcaaaaggTAGAAGAATCGagtctg
aaagggtcccaaacttacgaaatctaaaaattggaaaaaatagtctctca
aagggttgcAAAATGTCGAAATTCAGTAGTCTCTCAAAtggtcgattttc
gaactttgacTCGGActtacccgtcacctcgcaaacctagtagcTCCCCC
CGGGGCAGCTTAAAATGTTGTGTGTTTATGGTCCGTCTTTAGAAGTAGTT
ATCCTGTAGACAGATTGAAGTGTTTATGAATTTTCATAGGCTGTACTATG
GAGATGTTTGAATCAAGTCCTTACTTCGCTGCTGTCAATACAAATCAAGT
CATGATCGATCTTTACATCGAAAACGCAAAATCACTTGGCGTTCCTTTTG
AAGATGATAGCATGAGAGACATATTGCAAGCTTCGACAGATATGGGAAAT
GTATCAGCAATGAAACCATCTATACACCCTATATATAAAATAAAATCGGA
AGAAACAAACCATAACCATGGCTTTACAAAAGCCGCTGGATCTGCGGAAA
GTCAGTTACCCACATTGAATTCAGCAAAGAGTATGGCAATGACCGCTATT
GATATCGTTTGCGAGGAAGGACTTTCAGAAAAGGTTCAGAAAAGCTTCGA
AGATTCCTTACTGTAGGCTCATTGAAATGGAACAGTTGATTTACAATTTG
TGGGTATTGGTGTATTAGGTTTTACAGGAATATCTTTTAACCTTGTTTCA
CATTTNTTTAGAAAAGGTTCAGAAAAGCTTCGAAGATTCCTTACTGTAGG
CTCATTGAAATGGAACAGTTGATTTACAATTTGTGGGTATTGGTGTATTA
GGTTTTATAGGAATATCTTTTAACCTTGTTTCACATTCATATATTACATT
TCTGAAGTATTGTCTAAAAAAATGGTCTCgaataaaataataaatgatTA
AAGTAATACTGCGTTGGAAAGATAGTTCCAACTGAggcttttcttttaaa
ttgtaTTGTACAAGGTTTCCTTTAGCCAGGGTTTCCTTTAATGTATTAAA
ATGTGACCATTGCCATTTTTGGCTGGAACAGACTTTGACTAAATcttctt
tctatttattttttcccacaTTCCATTTACAATTTGTAAACAGCATACAC
AACAGCAGTCACAAAGAAATGTCCATAATCAATCGTTAACTCTGTAAAAT
CGTCATTTTCTTTATCCATCAAAGTTCTACTGGCAATCGAAGTTCCTTGA
TGTAAATTTTGACCTACGTGAACCATCGAGACGATCCGATAACGACTGAA
TCCAAGATGTTTGACTTTCTCTTTGATGGAATTACTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042856-exon-sc0003737-1491911889:5149..5319 | TCONS_00042856-exon-sc0003737-1491911889:5149..5319 | Clytia hemisphaerica | exon |
| TCONS_00042856-exon-sc0003737-1510915933:5149..5319 | TCONS_00042856-exon-sc0003737-1510915933:5149..5319 | Clytia hemisphaerica | exon |
| TCONS_00042856-exon-sc0003737-1575043694:5149..5319 | TCONS_00042856-exon-sc0003737-1575043694:5149..5319 | Clytia hemisphaerica | exon |
| TCONS_00042856-exon-sc0003737-1491911889:5625..5894 | TCONS_00042856-exon-sc0003737-1491911889:5625..5894 | Clytia hemisphaerica | exon |
| TCONS_00042856-exon-sc0003737-1510915933:5625..5894 | TCONS_00042856-exon-sc0003737-1510915933:5625..5894 | Clytia hemisphaerica | exon |
| TCONS_00042856-exon-sc0003737-1575043694:5625..5894 | TCONS_00042856-exon-sc0003737-1575043694:5625..5894 | Clytia hemisphaerica | exon |
| TCONS_00042856-exon-sc0003737-1491911889:9488..10538 | TCONS_00042856-exon-sc0003737-1491911889:9488..10538 | Clytia hemisphaerica | exon |
| TCONS_00042856-exon-sc0003737-1510915933:9488..10538 | TCONS_00042856-exon-sc0003737-1510915933:9488..10538 | Clytia hemisphaerica | exon |
| TCONS_00042856-exon-sc0003737-1575043694:9488..10538 | TCONS_00042856-exon-sc0003737-1575043694:9488..10538 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003737 | supercontig | sc0003737:5149..10538 + |
Blast
BLAST of TCONS_00042856 vs. Swiss-Prot (Human)
Match: P20D2 (Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2) HSP 1 Score: 227.254 bits (578), Expect = 7.394e-68 Identity = 116/267 (43.45%), Postives = 166/267 (62.17%), Query Frame = 3
Query: 15 GTPAEEGGGGKCLMIEKGVFNEVDICMMTHXXXXXXXXXXXXGVAQYKIVFKGKTAHAAAAPWEGINALDAAVACYNNVSMLRQQMKPTNRIHCTIVDGGERPNIIPERAELFYFVRAQTDKEVTGLVERLRACAEGAAQATGCTMEMFESSPYFAAVNTNQVMIDLYIENAKSLGVPF-EDDSMRDILQASTDMGNVSAMKPSIHPIYKIKSEETNHNHGFTKAAGSAESQLPTLNSAKSMAMTAIDIVCEEGLSEKVQKSFEDSL 812
GTPAEE GGGK +IE G F +D+ M HPS + + + GK +H+A+ PWEG+NALDAAV YNN+S+ RQQMKPT R+H I +GG +PNIIP +EL Y+ RA + KE+ L ++ C AA A+GCT+E+ + + V N+ + Y+EN + LG+ F +D+M + STD GNVS + P IHP + I S NH +T+AAGS E+Q TL +AK++AMTA+D++ + L E +++ F+ L
Sbjct: 160 GTPAEEDGGGKIDLIEAGAFTNLDVVFMAHPSQENAAYLPDMAEHDVTVKYYGKASHSASYPWEGLNALDAAVLAYNNLSVFRQQMKPTWRVHGIIKNGGVKPNIIPSYSELIYYFRAPSMKELQVLTKKAEDCFRAAALASGCTVEIKGGAHDYYNVLPNKSLWKAYMENGRKLGIEFISEDTMLNGPSGSTDFGNVSFVVPGIHPYFHIGSNALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLEGIREDFKLKL 426
The following BLAST results are available for this feature:
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